AT5G04480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biosynthetic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: glycosyl transferase family 1 protein (TAIR:AT4G01210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1271886..1277793 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119830.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 1050 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVRNSLSLEI DDNGGAGRDG NHNANNVAGN GDTSFHSIRD RLRLKRNSSD RRDRSHSGLD RPSLRTRPHH IGRSLNRKGL LSLLKPRGTC LLYFLVAFTV 0101: CAFVMSSLLL QNSITWQGNV KGGQVRSQIG LGSTLKYVPG GIARTLIEGK GLDPLRSAVR IGVRPPRLAL VLGNMKKDPR TLMLVTVMKN LQKLGYVFKV 0201: FAVENGEARS LWEQLAGHVK VLVSEQLGHA DWTIFEGVIA DSLEAKEAIS SLMQEPFRSV PLIWIVHEDI LANRLPVYQR MGQNSLISHW RSAFARADVV 0301: VFPQFTLPML HSVLDDGNFV VIPESVVDVW AAESYSETHT KQNLREINEF GEDDVIILVL GSSFFYDEFS WDNAVAMHML GPLLTRYGRR KDTSGSFKFV 0401: FLYGNSTKGQ SDAVQEVASR LGLTEGTVRH FGLNEDVNRV LRMADILVYA SSQEEQNFPP LIVRAMSFGI PIITPDFPIM KKYMADEVHG IFFRRNDPDA 0501: LLKAFSPLIS DGRLSKFAQT IASSGRLLTK NLMATECITG YARLLENMLH FPSDTFLPGS ISQLQVAAWE WNFFRSELEQ PKSFILDSAY AFIGKSGIVF 0601: QVEEKFMGVI ESTNPVDNNT LFVSDELPSK LDWDVLEEIE GAEEYEKVES EELEDRMERD VEDWEEIYRN ARKSEKLKFE VNERDEGELE RTGEPLCIYE 0701: IYNGAGAWPF LHHGSLYRGL SLSSKDRRLS SDDVDAADRL PLLNDTYYRD ILCEIGGMFS VANKVDSIHM RPWIGFQSWR AAGRKVSLSS KAEESLENII 0801: KQETKGEIIY FWTRLDIDGD AYGSKNALTF WSMCDILNQG NCRTTFEDAF RHMYGLPEHI EALPPMPEDG HHWSSLHNWV MPTPSFLEFV MFSRMFSESL 0901: DALHNNLNDS KSCSLASSLL ERKHCYCRVL ELLVNVWAYH SGRKMVYINP RDGSLEEQHP LQQRKGLMWA KYFNFTLLKS MDEDLAEAAD DKDHPRERWL 1001: WPLTGEVHWK GVYEREREER YRLKMDKKRK TKEKLYDRIK NGYKQKSLGG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)