AT4G09150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : T-complex protein 11 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
T-complex protein 11; FUNCTIONS IN: phosphopantetheine binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: T-complex 11 (InterPro:IPR008862), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: T-complex protein 11 (TAIR:AT1G22930.1); Has 14735 Blast hits to 9884 proteins in 1062 species: Archae - 66; Bacteria - 2337; Metazoa - 6091; Fungi - 1162; Plants - 694; Viruses - 23; Other Eukaryotes - 4362 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:5828753..5833475 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122910.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||
| Length | 1097 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTEPERLGGI SLSFPVNEED TVTTTSPKTL PRRLRRRLLE PKSPVSAAEI DSKLREADLR RQQYYESLSS KARPKMRSPR SGSIEELSQR LESKLNAAEQ 0101: KRLSILEKEL ARLAKMDEAR QAAKNGLEQR VEKERDELES KVEERVLKAE KNRMLLFKAM AQRRAAKRQR AAQSLMKKAI QETRYKESVR AAIYQKRAAA 0201: ESKRMGILEA ERRRANARLT RVFGAASSVR SQKEAERRKM KDRLEERLQR AKKLKAQYMR RRRGMDSCSS SRSETMRKNQ VHLVRMLVRC WRRFAKYKKS 0301: TFVLARAYHE LGINEKSIES VPFEQFAIQM NSVSVIQTVK ALLDRLEIRL TLSKASNVEN INHLLKHIFP PVRRGKSPSP MSKGEQNSPN SKMGYQKLKK 0401: IARYPARIFL CAYMIKQHPG AIFRGRGEHE IALVESATCL IREFELLVKV ILEGPESTLP GNVSFVAQRP KKFRSQLEAF DKAWCSYLEG FVVWKINDAK 0501: LLEKDLARTQ ESELSEVSKH TSSPKIIDSG LNQKTVKASS PTNRALFSET DGARESKAPA DSHLPSSSSP SPGSSNLSPS LNSGSEAIST PNVVANSFDA 0601: ALASENEVIV NEIVHDNSSS FADSLDPNTG DTSNLQVRVK ETMEKAFWDG VMESMKQSQP DFSWVIKLMK EVRDELCEIS PKDWRQEIVQ TIDTDVLSQL 0701: LASGNVDMGY LGNILEFSLG ILLKLSAPAN EEEIRVTHHK LMTELGEIVP TDGHSNSSYA VLMVKGLRFV LQQIQILKKE ISKSRLKLLE PLLKGPAGLE 0801: YLKKSFSSRH GSPDQASSSL PLTKRWLLSV RGEAEREWKE HKDALSAVIN NHSGSSGLPS TTMRTGGNVS SVSKVNTPSS PFPGIELSEC KGETVDLLVR 0901: IGLLKMVSEI GGLTLETVPE TFQLNLSRLR DVQSQIQKIT LVSISVLILQ QTLVSENSSS IDMEAITRTC INRLYEMLDA KPDAGLSEIM ETLSELLDSN 1001: DAETKKQVIA NMLVKSLQAG DAVFTHVSQT IYLAIRAAVL AGNNTKRKQL VETMLRKIGA ASLSDKVIEV SDILVLVATV SRSVHGLWYE ELLKKPN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)