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AT3G07400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipase class 3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); Has 393 Blast hits to 389 proteins in 69 species: Archae - 0; Bacteria - 12; Metazoa - 12; Fungi - 52; Plants - 275; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVC8eggNOG:ENOG410XPD2EMBL:AC009853EMBL:CP002686
EnsemblPlants:AT3G07400EnsemblPlants:AT3G07400.1entrez:819928ESTHER:arath-F21O3.11
Gene3D:3.40.50.1820Gene3D:3.40.50.300GeneID:819928GO:GO:0006629
GO:GO:0016021GO:GO:0016787Gramene:AT3G07400.1hmmpanther:PTHR21493
hmmpanther:PTHR21493:SF84HOGENOM:HOG000029473InterPro:IPR002921InterPro:IPR027417
InterPro:IPR029058KEGG:ath:AT3G07400ncoils:CoilOMA:WIRDQRA
Pfam:PF01764PhylomeDB:Q9SRS6Proteomes:UP000006548RefSeq:NP_187396.1
STRING:3702.AT3G07400.1SUPFAM:SSF52540SUPFAM:SSF53474TAIR:AT3G07400
TMHMM:TMhelixUniGene:At.43319UniGene:At.48630UniProt:Q9SRS6
Coordinates (TAIR10) chr3:+:2367456..2372238
Molecular Weight (calculated) 110865.00 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.24
Length 1003 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESIQSRVES WIRDQRARFL RVSWGPIQWR FRWPPWNGGD ADQRIKIRRE YEKRKKQIED LCLALKSESV EDLQDILCCM VLSECVYKRP ASEMVRAVNK
0101: FKADFGGQFI SLERVQPSSD HVPHRYLLAE AGDTLFASFV GTRQYKDIMA DANILQGHIF HDDVAEDECI EASEPIQSEP LKNNGEGLRN PKQLRQKPKP
0201: AAHRGFLARA KGIPALELYR LAQKKKRKLV LCGHSLGGAV AALATLAILR VVAASSKRGN ENIHVKCITF SQPPVGNAAL RDYVHEKGWH HYFKSYCIPE
0301: DLVPRILSPA YFHHYNEQRI SMAGETEATN GQGVTSEAEK RKTKEHEQLV IGVGPVQNSF WRLSKLVPLE AVKKQLDRYI GKKEDPAETS TANESAVLAP
0401: IRDVVIEPQS LEIEEGKDGI SLKPLPDAGN GPTVSGRSGG KTNSPNGFRV PYLPSYVPFG ELYLLGTASV ESLSEGEYSK LTSVRSVITE LRERLQSHSM
0501: KSYRSRFQRI HDLCMDVDGF FGVDQQKQFP HLQQWLGLAV GGSIELGHIV ESPVIRTATS IAPLGWKGVP GDKNAELLKV DITGFGLHLC SFVHAQVNGN
0601: WCSTTVESFP TTPAYSSDNV EQTELQKIRV VIGAPLKRPP SNQIVEDPLV PMFSSVDSKT GFPKEGINLG FFQEDKFVRP EGLEDLYIFC TSDFATVAKE
0701: VEVRTRRVRL LGLEGAGKTS LFRAILGQSM LSSMTHVENL QIQSDVQECI IGGVCYSDTV GVNLQELHLE ASRFREELWK GVRNLSKKID LIILVHNLSH
0801: RIPRYQNSTT LLQQQQPALA LLLDEVKSLG IPWVLAITNK FSVSAHQQKS AIEAVLQAYQ ASPNTTGIVN SIPYIISGSG TSSLPWAAVN AGNDGSVGVP
0901: KMIFAPLDLV KKPFQRKDTV FPVDGVNSLC ELVHRVLQTQ EEACFEELAR DRLLVELAKD RVVDGSQAKS SSMSAAAVGA SLGAGLGLVL AVVMGAGSAL
1001: RKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)