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AT5G51200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3414)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3414); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3414 (InterPro:IPR021827); Has 203 Blast hits to 190 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 18; Plants - 55; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:20440eggNOG:ENOG410XSBReggNOG:KOG1835EMBL:AB023044
EMBL:CP002688EnsemblPlants:AT5G51200EnsemblPlants:AT5G51200.1entrez:835195
GeneID:835195Genevisible:F4KBW6GO:GO:0000059GO:GO:0005635
GO:GO:0006999GO:GO:0009507GO:GO:0017056GO:GO:0044611
GO:GO:0051028Gramene:AT5G51200.1hmmpanther:PTHR31344hmmpanther:PTHR31344:SF0
InParanoid:Q9LU53InterPro:IPR021827KEGG:ath:AT5G51200KO:K14310
ncoils:CoilOMA:PCEKWQLPaxDb:F4KBW6Pfam:F4KBW6
Pfam:PF11894PRIDE:F4KBW6PRO:PR:F4KBW6ProteinModelPortal:F4KBW6
Proteomes:UP000006548RefSeq:NP_199933.5STRING:3702.AT5G51200.1TAIR:AT5G51200
UniGene:At.29691UniProt:F4KBW6
Coordinates (TAIR10) chr5:+:20804926..20819408
Molecular Weight (calculated) 206741.00 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.02
Length 1838 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVSPKDLVAI VHSSLLGTSR PTPTQRIELT HAIRNSFPSL QNLLSFPPPK PSDRAQVQSK EIRLPDSLPI SLDDQDIAIS LKLSDELHLN EIDSVRLLVS
0101: SNQEWGLMGR DPLEIQRLAT GLWYTGRRDL TSTLYTLLRA VVLDEGLEPD LIADIQGLLE ELIEAGLRQR LITLIKELNR EDPTGLGGPL CERYLIDSRG
0201: ALVERRAVVQ RERLILGHCL VLSILVDRPG SKDVKDIYYI LKDNAAQLTE GNDTISSQIT FSLLFSLIIT FVSDAISRLS DKSSMISQDA SFRTDFQDIV
0301: MASGSDPTAD GFIGGIRLAW AVHLMLIHDG ISGMDTISTA STTDMGHICS CLESIFSKNV FQFLLDNVLR TAAYQNDEED IIYIYNAYLH KLASCFLSHP
0401: IARDKVKESK DMAMSVLNSY RTSDPLDGSM QTEESDRPLP FISLMEFKEP ELLSGNDVLW TFVNFAGEDH TNFKTLVAFL EMLCTLASTQ EGASKVYELL
0501: RGTSFRSIGW PTLFDCIRIY DEKFKQSLQT AGAMMPEFLE GDAKALVAYL NVLQKVVENG NPTERKNWFP DIEPFFKLLG YENIPPYLKG ALRKTIAAFV
0601: NVFPEMRDSI WAFLEQYDLP VVVGSQVGKS DQSSQVYDMQ FELNEVEARR EQYPSTISFL NLINALIAGE KDVNDRGRRA YSDPCEKWQL VVACLQHFHM
0701: ILSMYDIQEE DLDGFTEHPH FLVSLETSSL QTQLPIIELL KDFMSGKALY RNLMGILQVG VNSIISERLS KTYGKILEKA VQLSLEILLL VFEKDLLVSD
0801: VWRPLYQPLD IILSQDHNQI IALLEYVRYD SLPQIQRSSI KIMNILRCSR LVGLVPMLIK IDAANSLIED YAACLEGRLE EGEVVENSCD DLGVLIMQLL
0901: VDNINRPAPS ITHLLLKFDL DAPVEGTVLQ PKFHYSCLKV ILEMLEKLPN PDINFLLFEF GFQLLCELNL DPLTSGPTMD LLSSKKYQFF LQHLDTIGVA
1001: TLPKRSGSQA LRISSLHQRA WLLKLLAIAL HTGSGSSSAH LEACQSILSH LFGREVTEAA NEPFSSSTYP QDGLDYAGTS SISKSKALAL LEILQFRSPD
1101: ASMQLPQIVS SLKYDSLVED ILGNRDTSVS GSIYYYSERG DRLIDLSSFS NKLWQKLHSG FPLVDSFPNV AELSEVRETI QQLLKWGWKY NRNLEEQAAQ
1201: LHMLAGWSQI VEVSACRRIS SLDNRSEILY RILDASLSAS ASPDCSLKMA FVLTQVALTC IAKLRDDRFS FQGALSSDTV TCLDVMMVKH LSTGACHSVL
1301: FKLVMAILRH ESSESLRRRQ YALLLSYFQY CQHMIALDVP TSVVQFLLLN EQDGEDLDIQ KIDKEQADLA RANFFIIKKE AQGILDLVIK DASQGSEFGK
1401: TISLYVLEAL VCIDHERYFL SQLQSRGFIR SCLGSISNIS YQDGTHLLES QQRACTLEAE LALLLRISHK YGKSGGQVLF SMGALEHIAS CRAISFKGNM
1501: RRVDMKLQSD VGYNVQKQRT IITAVLRLVF ALTSLVETSE FFEGRNKIVR DVVEFIKGHQ SLFDQLLRED FTQADDLLME QIILAVGILS KVWPFEENDG
1601: YGFVQGLFDM MSKLFIASPI KSILSQGSEL KLSQLRFSLT SYLYFLVTKN SLRLQVSDDS LDSSTKLRQP TLLLLASLLS HVTDSLERAA EKKSLLLHKI
1701: RDINELSRQD VDAIIKICDS QEYVTPSDNI HKRRYIAMVE MCQIVGNRDQ LITLLLQLAE HVLNIILIHL QDRSVSSNER GSYGSKSHIQ QEVTDLCGKL
1801: SPTIDRLALL NEGKVGHNLK VFQRLATTVK EMAIQKCV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)