suba logo
AT5G16910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose-synthase like D2
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase. Located in golgi membranes.
Computational
Description (TAIR10)
cellulose-synthase like D2 (CSLD2); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, response to cold, polysaccharide biosynthetic process, root hair elongation; LOCATED IN: Golgi apparatus, plasma membrane, integral to Golgi membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G16910-MONOMERCAZy:GT2EC:2.4.1.-eggNOG:COG1215
eggNOG:ENOG410IEH4EMBL:AL391141EMBL:CP002688EnsemblPlants:AT5G16910
EnsemblPlants:AT5G16910.1entrez:831554Gene3D:3.30.40.10GeneID:831554
Genevisible:Q9LFL0GO:GO:0005768GO:GO:0005794GO:GO:0005802
GO:GO:0005886GO:GO:0009409GO:GO:0016760GO:GO:0030173
GO:GO:0030244GO:GO:0048767GO:GO:0051753GO:GO:0071555
GO:GO:0097502Gramene:AT5G16910.1gramene_pathway:2.4.1.12gramene_pathway:PWY-1001
hmmpanther:PTHR13301hmmpanther:PTHR13301:SF35HOGENOM:HOG000241941InParanoid:Q9LFL0
InterPro:IPR005150InterPro:IPR013083InterPro:IPR029044iPTMnet:Q9LFL0
KEGG:ath:AT5G16910OMA:DWEEANGPaxDb:Q9LFL0Pfam:PF03552
Pfam:PF14570Pfam:Q9LFL0PhylomeDB:Q9LFL0PIR:T51546
PRIDE:Q9LFL0PRO:PR:Q9LFL0ProteinModelPortal:Q9LFL0Proteomes:UP000006548
RefSeq:NP_197193.1SMR:Q9LFL0STRING:3702.AT5G16910.1SUPFAM:SSF53448
SUPFAM:SSF57850TAIR:AT5G16910tair10-symbols:ATCSLD2tair10-symbols:CSLD2
TCDB:4.D.3.1.9TMHMM:TMhelixUniGene:At.20318UniProt:Q9LFL0
Coordinates (TAIR10) chr5:+:5561679..5565290
Molecular Weight (calculated) 128367.00 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.22
Length 1145 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASNKHFDKS RSNLSNNSDI QEPGRPPAGH SVKFAQRTSS GRYINYSRDD LDSELGGQDF MSYTVHIPPT PDNQPMDPSI SQKVEEQYVA NSMFTGGFKS
0101: NTRAHLMHKV IETEPNHPQM AGSKGSSCAI PGCDAKVMSD ERGQDLLPCE CDFKICRDCF IDAVKTGGGI CPGCKEPYKN THLTDQVDEN GQQRPMLPGG
0201: GGSKMERRLS MVKSTNKSAL MRSQTGDFDH NRWLFETTGT YGYGNAFWTK DGDFGSGKDG DGDGDGMGME AQDLMSRPWR PLTRKLKIPA GVISPYRLLI
0301: FIRIVVLALF LTWRVKHQNP DAVWLWGMSV VCELWFALSW LLDQLPKLCP INRATDLQVL KEKFETPTAS NPTGKSDLPG FDVFVSTADP EKEPPLVTAN
0401: TILSILAAEY PVEKLSCYVS DDGGALLTFE AMAEAASFAN IWVPFCRKHA IEPRNPDSYF SLKRDPYKNK VKSDFVKDRR RVKREFDEFK VRVNSLPDSI
0501: RRRSDAYHAR EEIKAMKMQR QNRDDEPMEP VKIPKATWMA DGTHWPGTWL TSASDHAKGD HAGIIQVMLK PPSDEPLHGV SEGFLDLTDV DIRLPLLVYV
0601: SREKRPGYDH NKKAGAMNAL VRASAIMSNG PFILNLDCDH YIYNSEALRE GMCFMMDRGG DRLCYVQFPQ RFEGIDPSDR YANHNTVFFD VNMRALDGLM
0701: GPVYVGTGCL FRRIALYGFN PPRSKDFSPS CWSCCFPRSK KKNIPEENRA LRMSDYDDEE MNLSLVPKKF GNSTFLIDSI PVAEFQGRPL ADHPAVKNGR
0801: PPGALTIPRE LLDASTVAEA IAVISCWYED KTEWGSRIGW IYGSVTEDVV TGYRMHNRGW KSVYCVTKRD AFRGTAPINL TDRLHQVLRW ATGSVEIFFS
0901: RNNALLASSK MKILQRIAYL NVGIYPFTSI FLIVYCFLPA LSLFSGQFIV QTLNVTFLVY LLIISITLCL LALLEIKWSG ISLEEWWRNE QFWLIGGTSA
1001: HLAAVLQGLL KVVAGVEISF TLTSKSGGDD IDDEFADLYM VKWTSLMIPP ITIIMVNLIA IAVGFSRTIY SVVPQWSKLI GGVFFSFWVL AHLYPFAKGL
1101: MGRRGRTPTI VYVWSGLVAI TISLLWVAIN PPAGNTEIGG NFSFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)