AT3G62010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.751 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22964945..22971149 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141558.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||
| Length | 1254 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSIPKEPEQV MKMRDGSVLG KKTILKSDHF PGCQNKRMTP QIEGAPNYRQ ADSLRVHGVA IPTAVGIRNV LRHIGAHKDG KQVKVLWISL REEPVVYING 0101: RPFVLRDVEK PFTNLEYTGI NRVRVEQMEA RLKEDILMEA SRYGNKILVT DELPDGQMVD QWEPVSTDSL KTLLEVYEEL QAEGYLVDYE RVPITDEKSP 0201: KETDFDLLIR KISQADINTE IIFNCQMGRG RTTTGMVIAT LVYFKRTGAS DQGFPRNNSF GRIFKAGENI TVNLPNSEEA IRRGEYAVVR SLIRVLEGGV 0301: EGKRQVDKVI DKCASMQNLR EAIATYRSSI LRQPDEKKRE AALSFFVEYL ERYYFLICFA VYLHSEGAFL QSGSLGHVSF ADWMRARPEL YSILRRLLRR 0401: DPMGALGYAA MKPSLIKIAE STDGRPHEMS VVAALRSGAV LGSQTVLKSD HSPGCQILNL PERVEGAPNF REVPGFPVYG VANPTIDGIR SVIERVGSSR 0501: GGRPVFWHNM REEPVIYING KPFVLREVER PYKNMLEYTG IDRDRVEGME ARLKEDILRE AKRYDGAIMV IHETKDGQIF DLWENVDADS VQTPLEVYKC 0601: LEADGFPIKY ARVPITDGKA PKSSDFDTLT SNIASASKDT AFVFNCQMGR GRTTTGTVIA CLVKLRINYG RPIKVLYDVL THEIVDEDSS SGGEETGSNN 0701: AEARPRNSGR RTEEEQGRAF GMDDILLLWK ITRLFDNGVE SREALDAVID RCSALQNIRE AVLQYRKVFN QQHVEPRVRS AALKRGAEYL ERYFRLIAFA 0801: AYLGSKAFDG FFVEGESKVT FKNWLHQRPE VQAMKWSIRL RPGRFFTIPE ELRAQHESQH GDAVMESIVN ERSGSVLSKG SILKMYFFPG QRTSSRLQIN 0901: GAPHVYKVDR YPVYSMATPT ISGAKKMLAY LGTKLKEEGG GSTERIVVTD LREEAVVYIN GTPFVLRELS KPVDTLKHVG ITGAVVESLE TRLKEDILAE 1001: VRETGGRMLL HREEYSPASN QSRVIGYWEN IQPENVKTPA EVYAALKDEN YNISYRRIPL TREKDALASD VDAIQYCKDD SAGSYLFVSH TGFGGVSYAM 1101: AITCLLLQPG QNFTATPTTN SSTLEEDDSP SGACDEEALS MGDYRDILSL IRVLSHGPQS KSDVDGIVEL CAGAGHLRED IVYYSKELNK LPITKDENRS 1201: YIMDMGVKAL RRYFYLITFR SYLYSTSPEE MKFLDWMKSR PELGHLCHNL RIDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)