AT1G49520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWIB complex BAF60b domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 3197 Blast hits to 1975 proteins in 305 species: Archae - 0; Bacteria - 439; Metazoa - 696; Fungi - 468; Plants - 732; Viruses - 19; Other Eukaryotes - 843 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18329736..18331691 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42861.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSDSDLVTQ LREILRSSDL ETTTPASVRR QLEVYFGVEL TDKKAFVREQ IDAFLESDAL LESKPEQEEE DCNGDQNDEE GSENDDDKTE LPVKAKKRGG 101: GFNKICQLSP QLEKFLGTSQ LARTEVVKKM WAYIREHDLQ DPTNRRNILC DESLHSLFRV KTINMFQMNK ALAKHIWALN DGDGCFKNVK EEDVDETSGE 201: RDEKDVKIEE ALENNEEESR EEEDRSVRKR KRKKRKPAKS EEKPKKKGGG FTKVCSLSPE LQAFTGTPQL ARTEVVKMLW KYIKENNLQD PSDKRTIICD 301: ESLRSLFPVE SINMFQMNKQ LAKHIWPLVQ EDEAGTTNDP EKGKQKMKME TDEDNDESNE EKATSSRIKT EE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)