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AT1G49530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : geranylgeranyl pyrophosphate synthase 6
Curator
Summary (TAIR10)
encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase
Computational
Description (TAIR10)
geranylgeranyl pyrophosphate synthase 6 (GGPS6); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G20160.1); Has 16450 Blast hits to 16445 proteins in 2927 species: Archae - 341; Bacteria - 9363; Metazoa - 273; Fungi - 440; Plants - 451; Viruses - 12; Other Eukaryotes - 5570 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G49530-MONOMEREC:2.5.1.-EC:2.5.1.1EC:2.5.1.10
EC:2.5.1.29eggNOG:COG0142eggNOG:KOG0776EMBL:AB000835
EMBL:AC007504EMBL:BT011230EMBL:BT012158EMBL:CP002684
EnsemblPlants:AT1G49530EnsemblPlants:AT1G49530.1entrez:841377Gene3D:1.10.600.10
GeneID:841377Genevisible:O22043GO:GO:0004161GO:GO:0004311
GO:GO:0004337GO:GO:0005739GO:GO:0008299GO:GO:0016117
GO:GO:0033384GO:GO:0033386GO:GO:0045337GO:GO:0046872
Gramene:AT1G49530.1gramene_pathway:2.5.1.29gramene_pathway:PWY-5120gramene_pathway:PWY-5805-ARA
hmmpanther:PTHR12001hmmpanther:PTHR12001:SF52HOGENOM:HOG000009101InParanoid:O22043
InterPro:IPR000092InterPro:IPR008949InterPro:IPR017446KEGG:ath:AT1G49530
KO:K13789OMA:LCLVACEPANTHER:PTHR12001PaxDb:O22043
Pfam:O22043Pfam:PF00348PhylomeDB:O22043PRO:PR:O22043
PROSITE:PS00444PROSITE:PS00723ProteinModelPortal:O22043Proteomes:UP000006548
RefSeq:NP_175376.1scanprosite:PS00444scanprosite:PS00723SMR:O22043
STRING:3702.AT1G49530.1SUPFAM:SSF48576TAIR:AT1G49530tair10-symbols:GGPS6
UniGene:At.38214UniGene:At.49962UniPathway:UPA00259UniPathway:UPA00260
UniPathway:UPA00389UniProt:O22043
Coordinates (TAIR10) chr1:+:18332529..18333539
Molecular Weight (calculated) 36887.80 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.15
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPRYSLILS AMRLIRPSNR RLSSIASSDS EFISYMKNKA KSINKALDNS IPLCNNFVPL WEPVLEVHKA MRYTLLPGGK RVRPMLCLVA CELVGGQEST
101: AMPAACAVEM IHAASLILDD LPCMDDDSLR RGKPTNHKVF GEKTSILASN ALRSLAVKQT LASTSLGVTS ERVLRAVQEM ARAVGTEGLV AGQAADLAGE
201: RMSFKNEDDE LRYLELMHVH KTAVLVEAAA VVGAIMGGGS DEEIERLKSY ARCVGLMFQV MDDVLDETKS SEELGKTAGK DLITGKLTYP KVMGVDNARE
301: YAKRLNREAQ EHLQGFDSDK VVPLLSLADY IVKRQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)