AT5G24620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT2G17860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8430918..8432289 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44750.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRSPMVPMA VLVYVSLLFS VSYSSTFVIT NNCPFTIWPG TLAGSGTQPL PTTGFRLDVG QSVRIPTALG WSGRIWARTG CNFDANGAGK CMTGDCGGKL 101: ECAGNGAAPP TSLFEITLGH GSDDKDFYDV SLVDGYNLPI VALPTGGGLV GACNATGCVA DINISCPKEL QVMGEEEAER GGVVACKSAC EAFGLDQYCC 201: SGQFANPTTC RPSLYSSIFK RACPRAYSYA FDDGTSTFTC KASEYAIIFC PGRVKRPDSL NSDPPSPPQN QLGQPMAPPT QNQYGQPMAP APQYQYGQPM 301: APPTQNQYGQ PLAPPTQNQY DQPLAPPTQN QYGQPMAPPT PPPPGPNEDS MTPPPQNQNG DGQFMPPPTL DQDPNDQYMN PPIQDQSQRE TQSSSDLLRP 401: YPVLLLLGFS LTALRQSGTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)