AT3G55850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Amidohydrolase family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LAF3 ISOFORM 2 (LAF3 ISF2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20721866..20725489 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62946.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 576 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLFVIVSAA VFLLISVAYL PLLNDLYWST LKSLTPPAGI VADLLVTNGT IFTSDSSLPF ADSMAIRNGR ILKVGSFATL KGFIGDGTME VNLEGKIVVP 101: GLIDSHVHLI SGGLQMAQVG LRGVSQKDEF CKMVKDAVQN AKEGSWILGG GWNNDFWGGE LPSASWIDEI SPRNPVWLIR MDGHMALANS LALKIAGVIS 201: LTEDPVGGTI MRMPSGEPTG LLIDAAMELV TPWVKEISVD ERREALFRAS KYALTRGVTT VIDLGRYFPG TTDELSWKDF QDVYLYADSS KKMMIRTCLF 301: FPITTWSRLL DLKLQKGSVL SEWLYLGGVK AFIDGSLGSN SALFYEEYID TPNNYGLEVM DPEKLSNFTM AADKSGLQVA IHAIGDKAND MILDMYESVA 401: AANGDRDRRF RIEHAQHLAP GSANRFGQLH IVASVQPDHL LDDADSVAKK LGSERAVKES YLFQSLLNGN ALLALGSDWP VADINPLHSI RTAVKRIPPK 501: WDHAWIPSER ISFTDALIAQ TISAARAAFL DHHLGSLSPG KLADFVILST NSWDEFSKDV SASVLATYVG GKQLYP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)