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AT1G54360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667806 (2013): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-ASSOCIATED FACTOR 6B
Curator
Summary (TAIR10)
Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6.
Computational
Description (TAIR10)
TBP-ASSOCIATED FACTOR 6B (TAF6B); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of transcription factor activity, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TATA BOX ASSOCIATED FACTOR II 59 (TAIR:AT1G04950.3); Has 448 Blast hits to 448 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 137; Plants - 65; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5095eggNOG:KOG2549EMBL:AC005287EMBL:AY062457
EMBL:AY463630EMBL:AY463631EMBL:AY463632EMBL:BT003362
EMBL:CP002684EnsemblPlants:AT1G54360EnsemblPlants:AT1G54360.1EnsemblPlants:AT1G54360.2
EnsemblPlants:AT1G54360.3EnsemblPlants:AT1G54360.4EnsemblPlants:AT1G54360.5entrez:841877
ExpressionAtlas:F4HVA6Gene3D:1.10.20.10Gene3D:1.25.10.10GeneID:841877
Genevisible:F4HVA6GO:GO:0005634GO:GO:0006352GO:GO:0051090
hmmpanther:PTHR10221hmmpanther:PTHR10221:SF11InParanoid:F4HVA6IntAct:F4HVA6
InterPro:IPR004823InterPro:IPR009072InterPro:IPR011442InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT1G54360KO:K03131OMA:RAPENRD
PaxDb:F4HVA6Pfam:PF02969Pfam:PF07571PIR:C96585
PRIDE:F4HVA6PRO:PR:F4HVA6ProteinModelPortal:F4HVA6Proteomes:UP000006548
Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042RefSeq:NP_001031187.2RefSeq:NP_001031188.2RefSeq:NP_001185221.1
RefSeq:NP_175838.3RefSeq:NP_974024.2SMART:SM00803SMR:F4HVA6
STRING:3702.AT1G54360.2SUPFAM:SSF47113SUPFAM:SSF48371TAIR:AT1G54360
tair10-symbols:TAF6Btair10-symbols:TAF6B1UniGene:At.27336UniGene:At.64855
UniProt:F4HVA7UniProt:F4HVB0UniProt:Q6S7A2UniProt:Q8W4N6
Coordinates (TAIR10) chr1:+:20290600..20293160
Molecular Weight (calculated) 56500.40 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.20
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTKESIEVI AQSIGLSTLS PDVSAALAPD VEYRVREVMQ EAIKCMRHAR RTTLMAHDVD SALHFRNLEP TSGSKSMRFK RAPENRDLYF FDDKDVELKN
101: VIEAPLPNAP PDASVFLHWL AIDGIQPSIP QNSPLQAISD LKRSEYKDDG LAARQVLSKD LQIYFDKVTE WALTQSGSTL FRQALASLEI DPGLHPLVPF
201: FTSFIAEEIV KNMDNYPILL ALMRLARSLL HNPHVHIEPY LHQLMPSIIT CLIAKRLGRR SSDNHWDLRN FTASTVASTC KRFGHVYHNL LPRVTRSLLH
301: TFLDPTKALP QHYGAIQGMV ALGLNMVRFL VLPNLGPYLL LLLPEMGLEK QKEEAKRHGA WLVYGALMVA AGRCLYERLK TSETLLSPPT SSVWKTNGKL
401: TSPRQSKRKA SSDNLTHQPP LKKIAVGGII QMSSTQMQMR GTTTVPQQSH TDADARHHNS PSTIAPKTSA AAGTDVDNYL FPLFEYFGES MLMFTPTHEL
501: SFFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)