AT1G20000.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : TBP-associated factor 11B | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein). | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
TBP-associated factor 11B (TAF11b); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: root, inflorescence, leaf; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11 (TAIR:AT4G20280.1); Has 325 Blast hits to 325 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 66; Plants - 51; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:6936898..6937666 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 23433.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 204 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAFNARSCCF ASSNERVTCN CNCLKDQPVP RMKHSKDPFE AAMEEQEESP VETEQTLEGD ERAVKKCKTS VVAEAKNKDE VEFTKNITGA DPVTRANKMQ 101: KILSQFTEEQ MSRYESFRRS GFKKSDMEKL VQRITGGPKM DDTMNIVVRG IAKMFVGDLV ETARVVMRER KESGPIRPCH IRESYRRLKL QGKVPQRSVQ 201: RLFR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)