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AT1G20000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : TBP-associated factor 11B
Curator
Summary (TAIR10)
Encodes TAF11b, a putative TBP-associated factor (TBP: TATA binding protein).
Computational
Description (TAIR10)
TBP-associated factor 11B (TAF11b); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: root, inflorescence, leaf; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11 (TAIR:AT4G20280.1); Has 325 Blast hits to 325 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 66; Plants - 51; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5251eggNOG:KOG3219EMBL:AC022472EMBL:CP002684
EnsemblPlants:AT1G20000EnsemblPlants:AT1G20000.1entrez:838589Gene3D:1.10.20.10
GeneID:838589GO:GO:0003713GO:GO:0005669GO:GO:0006355
GO:GO:0008134GO:GO:0051123Gramene:AT1G20000.1hmmpanther:PTHR13218
InParanoid:F4HR03IntAct:F4HR03InterPro:IPR006809InterPro:IPR009072
KEGG:ath:AT1G20000KO:K03135OMA:RVVMRERPANTHER:PTHR13218
PaxDb:F4HR03Pfam:F4HR03Pfam:PF04719PIR:D86333
PRIDE:F4HR03PRO:PR:F4HR03ProteinModelPortal:F4HR03Proteomes:UP000006548
Reactome:R-ATH-674695Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042RefSeq:NP_173429.1SMR:F4HR03STRING:3702.AT1G20000.1
SUPFAM:SSF47113TAIR:AT1G20000tair10-symbols:TAF11bUniGene:At.51686
UniProt:F4HR03
Coordinates (TAIR10) chr1:-:6936898..6937666
Molecular Weight (calculated) 23433.20 Da
IEP (calculated) 9.59
GRAVY (calculated) -0.79
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFNARSCCF ASSNERVTCN CNCLKDQPVP RMKHSKDPFE AAMEEQEESP VETEQTLEGD ERAVKKCKTS VVAEAKNKDE VEFTKNITGA DPVTRANKMQ
101: KILSQFTEEQ MSRYESFRRS GFKKSDMEKL VQRITGGPKM DDTMNIVVRG IAKMFVGDLV ETARVVMRER KESGPIRPCH IRESYRRLKL QGKVPQRSVQ
201: RLFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)