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AT4G30900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.530
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 827 Blast hits to 827 proteins in 297 species: Archae - 8; Bacteria - 571; Metazoa - 2; Fungi - 103; Plants - 24; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3568eggNOG:ENOG410JR2EEMBL:CP002687EnsemblPlants:AT4G30900
EnsemblPlants:AT4G30900.1EnsemblPlants:AT4G30900.2entrez:829214GeneID:829214
GO:GO:0004519GO:GO:0004527GO:GO:0005886Gramene:AT4G30900.1
Gramene:AT4G30900.2hmmpanther:PTHR12121hmmpanther:PTHR12121:SF36InterPro:IPR005135
KEGG:ath:AT4G30900OMA:WILYRGRPfam:PF03372Proteomes:UP000006548
RefSeq:NP_001119082.1RefSeq:NP_194819.3SMR:F4JR41STRING:3702.AT4G30900.1
SUPFAM:SSF56219TAIR:AT4G30900UniGene:At.31792UniProt:F4JR41
Coordinates (TAIR10) chr4:+:15040021..15042203
Molecular Weight (calculated) 35504.30 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.25
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSLSVMSF NLHDDLPEES PNSWLKRKDL CLTVITSYSP IVLCTQQGVK SQLDYLQQGL PAYDQFGISR TGPGDANDEH CTIFFNKEKV ELLEGGTFWL
101: SESPSVPGST AWGSAVPCIA TWATFQLKGA EPPGFSFQIV NTNLDEISPR ARRRSALLTW QHIASLPPTL PVVYCGGFNT QKESTTGRFL LGRSREHGVV
201: GDMRDAWPSA RVRKNVALIR TYHDFKGDKQ GTVEFLKLIF RALCLCWDRQ TQDLHTDWIL YRGRSIVPVM CEIVNDKIDD LYPSSHYPVF AEFMLPRSVR
301: MLEPTPPVSA PAQEES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)