AT4G30900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.530 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 827 Blast hits to 827 proteins in 297 species: Archae - 8; Bacteria - 571; Metazoa - 2; Fungi - 103; Plants - 24; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15040021..15042203 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35504.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVSLSVMSF NLHDDLPEES PNSWLKRKDL CLTVITSYSP IVLCTQQGVK SQLDYLQQGL PAYDQFGISR TGPGDANDEH CTIFFNKEKV ELLEGGTFWL 101: SESPSVPGST AWGSAVPCIA TWATFQLKGA EPPGFSFQIV NTNLDEISPR ARRRSALLTW QHIASLPPTL PVVYCGGFNT QKESTTGRFL LGRSREHGVV 201: GDMRDAWPSA RVRKNVALIR TYHDFKGDKQ GTVEFLKLIF RALCLCWDRQ TQDLHTDWIL YRGRSIVPVM CEIVNDKIDD LYPSSHYPVF AEFMLPRSVR 301: MLEPTPPVSA PAQEES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)