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AT3G12100.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.780
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cation efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 6181 Blast hits to 5813 proteins in 1885 species: Archae - 127; Bacteria - 3950; Metazoa - 1047; Fungi - 487; Plants - 277; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1230eggNOG:KOG1484EMBL:AK227789EnsemblPlants:AT3G12100
EnsemblPlants:AT3G12100.1entrez:820384ExpressionAtlas:Q0WSX7Gene3D:1.20.1510.10
GeneID:820384GO:GO:0005774GO:GO:0008324GO:GO:0016021
Gramene:AT3G12100.1hmmpanther:PTHR11562hmmpanther:PTHR11562:SF23InterPro:IPR002524
InterPro:IPR027469OMA:IGVWFFRPANTHER:PTHR11562PaxDb:Q0WSX7
Pfam:PF01545Pfam:Q6ICY4PhylomeDB:Q0WSX7PRIDE:Q0WSX7
ProteinModelPortal:Q0WSX7RefSeq:NP_187817.2STRING:3702.AT3G12100.1SUPFAM:0054606
TAIR:AT3G12100TIGRfam:TIGR01297TIGRFAMs:TIGR01297TMHMM:TMhelix
UniGene:At.39645UniProt:Q0WSX7UniProt:Q6ICY4
Coordinates (TAIR10) chr3:-:3854741..3857270
Molecular Weight (calculated) 43817.90 Da
IEP (calculated) 6.18
GRAVY (calculated) 0.16
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MERSISFNPR GDNELPDDRS SDVGYAANDR RLAYSRSFQQ SHGPRTPAVT EAAKPFLDRT VSSIDMPPDI YSVDGSDVFF GEGKDVDMAK VSVLEMVWEV
101: FGVVTSGNRQ MKRLFLLIAL NVLYSTTELS IGIFTGRVGL VSDAFHLTFG CGLLTFSLFA MATSRKKPDH AYSYGYKRLE VLSAFTNALF LMFMSFSLAV
201: EALHAFIQDE SEHKHYLIVS AVTNLLVNLL GVWFFRNYAR VNIAYRKAED MNYHSVCLHV ISDSIRSAGL ILASWLLSLG VENAEVLCLG LVSVTVFMLV
301: MPLFKATGGV LLQMAPPNIP SSALSKCLRQ ITSREDVTEV LQARFWEVVP GHTVGSLRLQ VKSGIDERPL LQYVYDVYHD LGVQDLTLQT DYT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)