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AT1G68100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ZIP metal ion transporter family
Curator
Summary (TAIR10)
member of IAA-alanine resistance protein 1
Computational
Description (TAIR10)
IAA-ALANINE RESISTANT 1 (IAR1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); Has 3060 Blast hits to 2483 proteins in 472 species: Archae - 4; Bacteria - 929; Metazoa - 1358; Fungi - 209; Plants - 119; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
Protein Annotations
BioGrid:28359eggNOG:COG0428eggNOG:KOG2693EMBL:AC012563
EMBL:AF216524EMBL:AK229148EMBL:AY072108EMBL:AY084533
EMBL:BT001920EMBL:CP002684EnsemblPlants:AT1G68100EnsemblPlants:AT1G68100.1
entrez:843138GeneID:843138Genevisible:Q9M647GO:GO:0005385
GO:GO:0005783GO:GO:0006882GO:GO:0016021GO:GO:0071577
Gramene:AT1G68100.1hmmpanther:PTHR16950hmmpanther:PTHR16950:SF16HOGENOM:HOG000185308
InParanoid:Q9M647InterPro:IPR003689KEGG:ath:AT1G68100KO:K14713
OMA:QEDFHGHPaxDb:Q9M647Pfam:PF02535Pfam:Q9M647
PhylomeDB:Q9M647PRIDE:Q9M647PRO:PR:Q9M647ProteinModelPortal:Q9M647
Proteomes:UP000006548Reactome:R-ATH-442380RefSeq:NP_564921.1STRING:3702.AT1G68100.1
TAIR:AT1G68100tair10-symbols:IAR1TCDB:2.A.5.4.7TMHMM:TMhelix
UniGene:At.17165UniProt:Q9M647
Coordinates (TAIR10) chr1:+:25521325..25524032
Molecular Weight (calculated) 50585.60 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.07
Length 469 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFSLRKLLV PILVLVLFLD LCVESGFSQS TPARDDHVHH HGGGCSHSHD HDHDHDHDHH VKKTTAKVEM KLPEELAEEE DMRLCGFGPC LHDHDHESSS
101: TLTGFALWLN ALGCSLLVSL ASLICLVLLP IMFVQGKPSK WFVDSLALFG AGAMLGDAFL HQLPHAFGGG HSHSNDHHEN HDHHDHSHSD SPSHSHSIQD
201: LSVGLSVLAG IVVFLLVEKL VRYVEENSSG SNTWGHHHHH HHAGSKKLKD EGDHNNLDQQ SSSDAIVNSS EKVSGGSTDK SLRKRKTSAS DATDKSDSGT
301: EITSDGKSDK PEQVETRSSS LVFGYLNLFS DGVHNFTDGM ALGSAFLIYG SVGGWSRTMF LLAHELPQEI GDFGILVRSG FTVTKALFFN FLSALVALAG
401: TALVLVWGNE PGQSSLIEGF TAGGFIYIAV AGVLAEMNNS GKSTLKNSAC HLISLILGMS VALCISLIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)