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AT3G07690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 6-phosphogluconate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process; LOCATED IN: glycerol-3-phosphate dehydrogenase complex, cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), NAD(P)-binding domain (InterPro:IPR016040), NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal (InterPro:IPR011128), NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal (InterPro:IPR006109), NAD-dependent glycerol-3-phosphate dehydrogenase (InterPro:IPR006168); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT2G41540.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G07690-MONOMEREC:1.1.1.8eggNOG:COG0240eggNOG:KOG2711
EMBL:AC009176EMBL:AC013483EMBL:CP002686EnsemblPlants:AT3G07690
EnsemblPlants:AT3G07690.1entrez:819960Gene3D:1.10.1040.10Gene3D:3.40.50.720
GeneID:819960GO:GO:0004367GO:GO:0005975GO:GO:0006952
GO:GO:0009331GO:GO:0046168GO:GO:0051287gramene_pathway:1.1.1.8
gramene_pathway:PWY-6118hmmpanther:PTHR11728hmmpanther:PTHR11728:SF17InterPro:IPR006109
InterPro:IPR006168InterPro:IPR008927InterPro:IPR011128InterPro:IPR013328
InterPro:IPR016040KEGG:00564+1.1.1.94KEGG:ath:AT3G07690OMA:TREFSCE
PaxDb:Q9S785Pfam:PF01210Pfam:PF07479PRINTS:PR00077
ProteinModelPortal:Q9S785Proteomes:UP000006548RefSeq:NP_187426.3SMR:Q9S785
STRING:3702.AT3G07690.1SUPFAM:SSF48179SUPFAM:SSF51735TAIR:AT3G07690
TMHMM:TMhelixUniGene:At.18340UniGene:At.40313unipathway:UPA00940
UniProt:F4JFL8
Coordinates (TAIR10) chr3:+:2457232..2459378
Molecular Weight (calculated) 52540.10 Da
IEP (calculated) 7.31
GRAVY (calculated) -0.06
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDHLVETNS VPSRLVEERL DEIRRVMGKA DDDPLRIVGV GAGAWGSVFI AMLQENYGKF RGKVSVRIWR RGGRAIDKAT AEHLFEVINS REELLRRLIR
101: RCAYLKYVEA RLGDRVLYAD EILKDGFCLN MIETPLCPLK VVTNLQEAVW DADIVINGLP STETFQVFNE ISKYWKERVN APVIISLAKG VEAEFEPHPR
201: IVTPTQMIHR ATGIPLENIL YLGGPNIASE VYNKEYANAR ICGSEKWRKP LGKFLRQSHF IVWDNSDLIT HEVMGGLKNV YAIGAVFVLA FLYSTGMVAT
301: LTKESATSKS VYFAHCTSEM IFITHLLAKE PEKLAGPLLA DTYVTLLKGR NAWYGQKLAK GELSLEMGDS IKGKGMIQGV SAVKAFFELL NQSSLSLQHP
401: EEGKPVTPAE LCPILKMLYR ILITREFSCE AILEALRDET MNDPRELIEI AHSHLFFQPW LLGQKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)