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AT3G53780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.922
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like protein 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHOMBOID-like protein 4 (RBL4); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 6501 Blast hits to 6500 proteins in 1879 species: Archae - 139; Bacteria - 4229; Metazoa - 522; Fungi - 151; Plants - 328; Viruses - 0; Other Eukaryotes - 1132 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0705eggNOG:KOG2289EMBL:AL132960
EMBL:BT029533EMBL:CP002686EnsemblPlants:AT3G53780EnsemblPlants:AT3G53780.1
EnsemblPlants:AT3G53780.2entrez:824545ExpressionAtlas:F4JBM4Gene3D:1.20.1540.10
GeneID:824545Genevisible:F4JBM4GO:GO:0004252GO:GO:0005886
GO:GO:0009506GO:GO:0016021GO:GO:0016485hmmpanther:PTHR22936
hmmpanther:PTHR22936:SF38HOGENOM:HOG000239666InParanoid:F4JBM4InterPro:IPR002610
InterPro:IPR022764KEGG:ath:AT3G53780MEROPS:S54.A06OMA:SETAPIW
PANTHER:PTHR22936PaxDb:F4JBM4Pfam:PF01694PIR:T45918
PRIDE:F4JBM4PRO:PR:F4JBM4ProteinModelPortal:F4JBM4Proteomes:UP000006548
RefSeq:NP_566989.1RefSeq:NP_850698.1SMR:F4JBM4STRING:3702.AT3G53780.2
SUPFAM:SSF144091TAIR:AT3G53780tair10-symbols:ATRBL4tair10-symbols:RBL4
TMHMM:TMhelixUniGene:At.19072UniProt:A1A6L3
Coordinates (TAIR10) chr3:-:19924729..19926025
Molecular Weight (calculated) 29451.60 Da
IEP (calculated) 9.17
GRAVY (calculated) 0.55
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGLDVKKVV KGDEGWRLLS CNWLHGGVVH LLMNMLTLLF IGIRMEREFG FIRIGLLYLI SGFGGSILSA LFLRSNISVG ASGAVFGLLG GMLSEIFINW
101: TIYSNKVVTI VTLVLIVAVN LGLGVLPGVD NFAHIGGFAT GFLLGFVLLI RPHYGWINQR NGPGAKPHRF KIYQGILWTI SLLILVAGFI VGLISLFNNV
201: DGNEHCSWCH YLSCVPTSKW SCNREPASCT TTQLGNQLSM TCLRNGKSAS YILANPSDSR INSLCVQLCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)