AT2G36330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.874 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterised protein family (UPF0497) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G62820.1); Has 241 Blast hits to 239 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 1; Plants - 232; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15233620..15235298 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31184.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||
| Length | 283 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSPAKTMPS MSPSSVSTEK SPPPSDTSMA IVAFDNSTTH FSSSPSPPHS LDHSSESEKE DAKSKPESRR NKNPGKVEET PSPIVVVHNH NRSVKEVVPT 101: RKSARVGSGR SSGQRSGAVS AILRRSRREE VVKFSALGFR LSEVVLALIS FSIMAADKTK GWSGDSFDRY KEYRFCLSVN VVAFVYSSFQ ACDLAYHLVK 201: EKHLISHHLR PLFEFIIDQV LAYLLMSAST AAVTRVDDWV SNWGKDEFTE MASASIAMSF LAFLAFAFSS LISGYNLFNQ GSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)