AT3G47670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.567 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: pectin methylesterase 1 (TAIR:AT1G53840.1); Has 898 Blast hits to 891 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 898; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17575019..17575849 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30392.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 276 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQQSFTFQLL PVDFFSPKIT DSSSSNFLRS KNHYPSMESI NTLKGYDKVS DQENQIHHHH HSPLPKPSSF SRKTLIATGS VVSLLLILSV VALTAGAFTH 101: SPPHHPPISS ASLKSLCSVT RYPETCFNSL SSSLNESDSK LNPESILELS LRVAAKEISN LSISFRSIND MPEDAAVGDC VKLYTDALSQ LNDSITEIER 201: KKKKGGNNWL TEEVVGDVKT WISAAMTDGE TCSDGIEEMG TIVGNEIKKK MEMANQMMSI SLAIVSQMKK LLLIFH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)