AT5G18780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.566 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/FBD-like domains containing protein (TAIR:AT5G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:6264610..6266097 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50223.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.10 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MQGRVRGSGE DRISILPEPL LCHILSFLRT KDSVRTSVLS SRWRDLWLWV PRLDLDKSDF SDDNPSASFV DKFLNFRGES YLRGFKLNTD HDVYDISTLD 101: ACLMRLDKCK IQHFEIENCF GFCILLMPLI IPMCHTLVSL KLSFVILSKF GSLSLPCLEI MHFEKVIFPS DKSAEVLIAC SPVLRDLRIS QSGDDAVEVL 201: RVCSASLKSF TLKRTDHDYV GNGEYTVVID TPRLEYLNLK DYQCQGFKIV SMSEYVRVHV DVVFEVIGGT VLSKRNIICD FLSCVSNVRY MTISRRSLEF 301: IYRHLELKPR FKFHDLARLR ATMFSNSSPE MLPVILETCP NLKHLTLELV HDSLVTEGTS GLLTVLPRCL ISSLASVDIE SPITDKATEL KLVSYLLENS 401: TTLKKLVLRL NQSCRDKYEP GLLKQVLQSP RCSSLCQLVI L |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)