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AT5G55170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.695
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : small ubiquitin-like modifier 3
Curator
Summary (TAIR10)
Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
Computational
Description (TAIR10)
small ubiquitin-like modifier 3 (SUMO3); CONTAINS InterPro DOMAIN/s: Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20854eggNOG:COG5227eggNOG:KOG1769EMBL:AB010071
EMBL:AF510521EMBL:BT024755EMBL:CP002688EnsemblPlants:AT5G55170
EnsemblPlants:AT5G55170.1entrez:835610GeneID:835610Genevisible:Q9FLP5
GO:GO:0005634GO:GO:0005737GO:GO:0016925GO:GO:0031386
Gramene:AT5G55170.1hmmpanther:PTHR10562HOGENOM:HOG000207495InParanoid:Q9FLP5
InterPro:IPR000626InterPro:IPR022617InterPro:IPR029071KEGG:ath:AT5G55170
KO:K12160OMA:CDRRGLKPaxDb:Q9FLP5Pfam:PF11976
Pfam:Q9FLP5Pfscan:PS50053PhylomeDB:Q9FLP5PRO:PR:Q9FLP5
PROSITE:PS50053ProteinModelPortal:Q9FLP5Proteomes:UP000006548Reactome:R-ATH-3065676
Reactome:R-ATH-3065678Reactome:R-ATH-3065679Reactome:R-ATH-3108214Reactome:R-ATH-4570464
Reactome:R-ATH-4615885Reactome:R-ATH-5696395RefSeq:NP_200328.1SMR:Q9FLP5
STRING:3702.AT5G55170.1SUPFAM:SSF54236TAIR:AT5G55170tair10-symbols:ATSUMO3
tair10-symbols:SUM3tair10-symbols:SUMO 3tair10-symbols:SUMO3UniGene:At.29459
UniProt:Q9FLP5
Coordinates (TAIR10) chr5:-:22385468..22386071
Molecular Weight (calculated) 12581.00 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.58
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPQDDKPI DQEQEAHVIL KVKSQDGDEV LFKNKKSAPL KKLMYVYCDR RGLKLDAFAF IFNGARIGGL ETPDELDMED GDVIDACRAM SGGLRANQRQ
101: WSYMLFDHNG L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)