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AT5G61250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucuronidase 1
Curator
Summary (TAIR10)
Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.
Computational
Description (TAIR10)
glucuronidase 1 (GUS1); FUNCTIONS IN: beta-glucuronidase activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: glucuronidase 2 (TAIR:AT5G07830.1); Has 384 Blast hits to 378 proteins in 72 species: Archae - 0; Bacteria - 40; Metazoa - 184; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
CAZy:GH79eggNOG:ENOG410IHNVeggNOG:ENOG410YDJWEMBL:AK317449
EnsemblPlants:AT5G61250EnsemblPlants:AT5G61250.1EnsemblPlants:AT5G61250.2entrez:836246
ExpressionAtlas:B9DH99Gene3D:3.20.20.80GeneID:836246GO:GO:0005975
GO:GO:0016020GO:GO:0016798Gramene:AT5G61250.1Gramene:AT5G61250.2
hmmpanther:PTHR14363hmmpanther:PTHR14363:SF17InterPro:IPR005199InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT5G61250OMA:GISSKHNPANTHER:PTHR14363
PaxDb:B9DH99Pfam:PF03662Pfam:Q8L608PhylomeDB:B9DH99
PRIDE:B9DH99ProteinModelPortal:B9DH99RefSeq:NP_200933.2RefSeq:NP_851238.1
STRING:3702.AT5G61250.1SUPFAM:SSF51445TAIR:AT5G61250tair10-symbols:AtGUS1
tair10-symbols:GUS1UniGene:At.49202UniGene:At.60002UniProt:B9DH99
UniProt:Q8L608
Coordinates (TAIR10) chr5:-:24632294..24634597
Molecular Weight (calculated) 59867.80 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.11
Length 539 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFNVVVFLS CLLLLPPVTF GSNMERTTLV IDGSRRIAET DENFICATLD WWPPEKCNYD QCPWGYASLI NLNLASPLLA KAIQAFRTLR IRIGGSLQDQ
101: VIYDVGDLKT PCTQFKKTDD GLFGFSEGCL YMKRWDEVNH FFNATGAIVT FGLNALHGRN KLNGTAWGGD WDHTNTQDFM NYTVSKGYAI DSWEFGNELS
201: GSGIWASVSV ELYGKDLIVL KNVIKNVYKN SRTKPLVVAP GGFFEEQWYS ELLRLSGPGV LDVLTHHIYN LGPGNDPKLV NKILDPNYLS GISELFANVN
301: QTIQEHGPWA AAWVGEAGGA FNSGGRQVSE TFINSFWYLD QLGISSKHNT KVYCRQALVG GFYGLLEKET FVPNPDYYSA LLWHRLMGKG ILGVQTTASE
401: YLRAYVHCSK RRAGITILLI NLSKHTTFTV AVSNGVKVVL QAESMKRKSF LETIKSKVSW VGNKASDGYL NREEYHLSPK DGDLRSKIML LNGKPLVPTA
501: TGDIPKLEPV RHGVKSPVYI NPLSISFIVL PTFDAPACS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)