AT5G07360.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 0.910 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Amidase family protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT3G25660.1); Has 19119 Blast hits to 19111 proteins in 2459 species: Archae - 260; Bacteria - 10767; Metazoa - 545; Fungi - 1387; Plants - 384; Viruses - 0; Other Eukaryotes - 5776 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr5:-:2326925..2330011 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 72954.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL 101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI 201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI 301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI 401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH 501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT 601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI |
||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)