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AT5G07360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amidase family protein; FUNCTIONS IN: amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: acrylonitrile catabolic process, aldoxime metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: Amidase family protein (TAIR:AT3G25660.1); Has 19119 Blast hits to 19111 proteins in 2459 species: Archae - 260; Bacteria - 10767; Metazoa - 545; Fungi - 1387; Plants - 384; Viruses - 0; Other Eukaryotes - 5776 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0154eggNOG:KOG1211EMBL:CP002688EnsemblPlants:AT5G07360
EnsemblPlants:AT5G07360.1entrez:830627ExpressionAtlas:F4K6N3Gene3D:3.90.1300.10
GeneID:830627GO:GO:0016884Gramene:AT5G07360.1gramene_pathway:3.5.1.4
gramene_pathway:PWY-581hmmpanther:PTHR11895hmmpanther:PTHR11895:SF73InParanoid:F4K6N3
InterPro:IPR000120InterPro:IPR023631KEGG:00970+6.3.5.7OMA:CRSAIDC
PANTHER:PTHR11895PaxDb:F4K6N3Pfam:PF01425PRIDE:F4K6N3
ProteinModelPortal:F4K6N3Proteomes:UP000006548RefSeq:NP_196353.2SMR:F4K6N3
STRING:3702.AT5G07360.1SUPFAM:SSF75304TAIR:AT5G07360UniGene:At.125
UniProt:F4K6N3
Coordinates (TAIR10) chr5:-:2326925..2330011
Molecular Weight (calculated) 72954.00 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.18
Length 659 amino acids
Sequence (TAIR10)
(BLAST)
001: MARPSIATCD PSARPCLATR GSLPRSRTCA PLLFLCLLLG LTVFCADANP SDSKLLCSRL LPCEPSIEMV RNCKNLWKLL DRKVSVPCRK ITTLTRTVTL
101: TELPDKTMEA KCLQGMFELI DSAFFNETKL QEIAKGATEM NVPIYRANRK LVATKNGGLE NPSPLVFNPS WNREVQRVQD KRFKYPSASG VKLPRDEEDI
201: AFMSVLELGE LIKTRQITSK ELVRIYLKQL KRYNHVLEAV VTYTEELAYK QAKEADDLLS QGTYLGPLHG IPYGLKDIVA VPGYKTTWGS TSFKDQFLDI
301: EAWVYKRLKA SGAVLVAKLV TGSMAYDDIW FGGRTRNPWN IEEFSTGSSA GPAASTSAGM VPFAIGSETA GSMTYPAARC GITALRPTFG SVGRTGVMSI
401: SESLDKLGPF CRTAADCAVI LDAIKGKDPD DLSSREIAFE DPFSVDITKL TVGYTKDADM KVVEVLGSKG VNMVPFELNY TVESVQGILN FTMDVDMLAH
501: FDEWQRTGQE DLYEAQDQWP VELRRARVVT AVDYIQAQRA RGKLIREVEK SFTVDAFIGN VTDWEKVCMG NLVGLPVLVI PTGFKNITDP PTNSCRRRTT
601: INAGIYAPPE RDHIALALGM AYQSVTDAHR KRPPIDDLGP DDSIPNPPRA LIPPRRLHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)