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AT3G55260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : beta-hexosaminidase 1
Curator
Summary (TAIR10)
Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). The enzyme displays no distinct preference for a specific terminal GlcNAc residue and indeed cleaved the asialoagalactodabsylglycopeptide GnGn to a mixture of products.
Computational
Description (TAIR10)
beta-hexosaminidase 1 (HEXO1); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 3 (TAIR:AT1G65590.1); Has 3779 Blast hits to 3705 proteins in 735 species: Archae - 2; Bacteria - 2420; Metazoa - 475; Fungi - 222; Plants - 128; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G55260-MONOMERBRENDA:3.2.1.52CAZy:GH20EC:3.2.1.52
eggNOG:COG3525eggNOG:KOG2499EMBL:AK227260EMBL:AL132954
EMBL:AM493720EMBL:AY084801EMBL:BT000920EMBL:CP002686
EnsemblPlants:AT3G55260EnsemblPlants:AT3G55260.1entrez:824692Gene3D:3.20.20.80
Gene3D:3.30.379.10GeneID:824692Genevisible:A7WM73GO:GO:0004563
GO:GO:0005773GO:GO:0005829GO:GO:0005975GO:GO:0009505
GO:GO:0015929Gramene:AT3G55260.1hmmpanther:PTHR22600hmmpanther:PTHR22600:SF16
HOGENOM:HOG000157972InParanoid:A7WM73IntAct:A7WM73InterPro:IPR013781
InterPro:IPR015883InterPro:IPR017853InterPro:IPR025705InterPro:IPR029018
InterPro:IPR029019KEGG:00511+3.2.1.52KEGG:00513+3.2.1.52KEGG:00520+3.2.1.52
KEGG:00531+3.2.1.52KEGG:00603+3.2.1.52KEGG:00604+3.2.1.52KEGG:ath:AT3G55260
KO:K12373OMA:WTPVNWEPaxDb:A7WM73Pfam:A7WM73
Pfam:PF00728Pfam:PF14845PhylomeDB:A7WM73PIR:T47665
PIRSF:PIRSF001093PRIDE:A7WM73PRINTS:PR00738PRO:PR:A7WM73
ProMEX:A7WM73ProteinModelPortal:A7WM73Proteomes:UP000006548Reactome:R-ATH-1660662
Reactome:R-ATH-2022857Reactome:R-ATH-2024101Reactome:R-ATH-2160916RefSeq:NP_567017.2
SMR:A7WM73STRING:3702.AT3G55260.1SUPFAM:SSF51445SUPFAM:SSF55545
TAIR:AT3G55260tair10-symbols:ATHEX2tair10-symbols:HEXO1UniGene:At.21628
UniProt:A7WM73
Coordinates (TAIR10) chr3:+:20489317..20492858
Molecular Weight (calculated) 61233.20 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.13
Length 541 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNLLRLIL LFITLSITSS LSTPSPADSP PYLWPLPAEF SFGNETLSVD PTVTLIVAGN GGGSLIIRAA FDRYMGIIFK HASGRGSLLS RIRFLKMVEY
101: DITSLKIVVH SDSEELQLGV DESYTLMVSK KNEQSIVGAA TIEANTVYGA LRGLETFSQL CAFDYITKSV QIYKAPWYIQ DKPRFGYRGL LIDTSRHYLP
201: IDVIKQIIES MSFAKLNVLH WHIVDEQSFP LETPTYPNLW KGAYSRWERY TVEDASEIVR FAKMRGINVM AEVDVPGHAE SWGTGYPDLW PSLSCREPLD
301: VTKNFTFDVI SGILADMRKI FPFELFHLGG DEVNTDCWKN TTHVKEWLQG RNFTTKDAYK YFVLRAQQIA ISKNWTPVNW EETFSSFGKD LDPRTVIQNW
401: LVSDICQKAV AKGFRCIFSN QGYWYLDHLD VPWEEVYNTE PLNGIEDPSL QKLVIGGEVC MWGETADTSV VLQTIWPRAA AAAERMWSTR EAVSKGNITL
501: TALPRLHYFR CLLNNRGVPA APVDNFYARR PPLGPGSCYA Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)