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AT4G19370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G31720.1); Has 77 Blast hits to 77 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSQSeggNOG:ENOG41108K8EMBL:AL022580EMBL:AL161550
EMBL:AY954860EMBL:CP002687EMBL:DQ132708EnsemblPlants:AT4G19370
EnsemblPlants:AT4G19370.1entrez:827678GeneID:827678GO:GO:0016021
Gramene:AT4G19370.1hmmpanther:PTHR31769hmmpanther:PTHR31769:SF6HOGENOM:HOG000236380
InterPro:IPR009606KEGG:ath:AT4G19370OMA:WDTERNCPfam:PF06749
PhylomeDB:O65708PIR:T05820Proteomes:UP000006548RefSeq:NP_193672.1
STRING:3702.AT4G19370.1TAIR:AT4G19370TMHMM:TMhelixUniGene:At.49405
UniProt:O65708
Coordinates (TAIR10) chr4:-:10566263..10567535
Molecular Weight (calculated) 24388.40 Da
IEP (calculated) 7.47
GRAVY (calculated) 0.04
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MHNLFLYSVV FSLGLVSFIT CFAAEFKRTQ KEDIRWDTER NCYVPGSHAF GLGSAAVLCF CLAQIVGNIV VFRNHRTRTK REDGYKITDL TLPTVLLLLS
101: WSNFVVVVLI LSTAISMSRA QAYGEGWLDE DCYLVKDGVF AASGCLAILG LGALTISATR IKVKKQQQLV QVVIKDQNQD QRRSMEEEQK HDEHQTNKSE
201: SVIHLVEEVS STNISRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)