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AT3G12900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.719
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G55290.1); Has 8653 Blast hits to 8615 proteins in 1001 species: Archae - 0; Bacteria - 1126; Metazoa - 119; Fungi - 1049; Plants - 4930; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G12900-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AC023838
EMBL:AP000385EMBL:CP002686EMBL:DQ446658EnsemblPlants:AT3G12900
EnsemblPlants:AT3G12900.1entrez:820473Gene3D:2.60.120.330GeneID:820473
GO:GO:0016491GO:GO:0046872GO:GO:0071281GO:GO:0071369
GO:GO:0071732Gramene:AT3G12900.1hmmpanther:PTHR10209hmmpanther:PTHR10209:SF113
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT3G12900
KO:K06892OMA:MLYTNDSPfam:PF03171Pfam:PF14226
Pfscan:PS51471PhylomeDB:Q9LE86PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_187896.1SMR:Q9LE86STRING:3702.AT3G12900.1SUPFAM:SSF51197
TAIR:AT3G12900UniGene:At.53284UniProt:Q9LE86
Coordinates (TAIR10) chr3:+:4104576..4106112
Molecular Weight (calculated) 39718.70 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.27
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MGINFEDQTT LFNFVVREGN GVKGMIDSGL SSVPRPFVQP LSERIPTQKA LTCEATQPID LSNLDGPQHK EVAKQIVEAA ETLGFFQVVN HGVSVELLEL
101: LKSSAHEFFA QAPEEKSMYL KEVSPSKLVK YGTSFVPDKE KAIEWKDYVS MLYTNDSEAL QHWPQPCREV ALEFLNSSME MVKNVVNILM ENVGVTLEEE
201: KMNGLMGTKM VNMNYYPTCP SPELTVGVGR HSDMGMLTVL LQDGIGGLYV KLDNGEWAEI PPVHGALVIN IGDTLQILSN GKYKSAEHRV RTTNIGSRVS
301: VPIFTAPNPS QKVGPLPEVV KRDGVARYKE FLFQDYMNNF FGQPHDGKKS LDFARAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)