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AT4G19690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : iron-regulated transporter 1
Curator
Summary (TAIR10)
Fe(II) transport protein (IRT1)
Computational
Description (TAIR10)
iron-regulated transporter 1 (IRT1); FUNCTIONS IN: manganese ion transmembrane transporter activity, zinc ion transmembrane transporter activity, cadmium ion transmembrane transporter activity, copper uptake transmembrane transporter activity, iron ion transmembrane transporter activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 2 (TAIR:AT4G19680.2); Has 937 Blast hits to 936 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 53; Fungi - 387; Plants - 413; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G19690EnsemblPlants:AT4G19690.1entrez:827713gramene_pathway:6.6.1.1
gramene_pathway:PWY-5934hmmpanther:PTHR11040hmmpanther:PTHR11040:SF50Pfam:PF02535
tair10-symbols:ATIRT1tair10-symbols:IRT1TMHMM:TMhelix
Coordinates (TAIR10) chr4:+:10707487..10708122
Molecular Weight (calculated) 22845.20 Da
IEP (calculated) 8.00
GRAVY (calculated) 0.51
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNSALLMK TIFLVLIFVS FAISPATSTA PEECGSESAN PCVNKAKALP LKVIAIFVIL IASMIGVGAP LFSRNVSFLQ PDGNIFTIIK CFASGIILGT
101: GFMHVLPDSF EMLSSICLEE NPWHKFPFSG FLAMLSGLIT LAIDSMATSL YTSKNAVGIM PHGHGHGHGP ANDVTLPIKE DDSSNAQLLR YRVIAMVRTH
201: IYTYRISLYF K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)