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AT3G07720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.941
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 5 (TAIR:AT5G48180.1); Has 10920 Blast hits to 5857 proteins in 349 species: Archae - 8; Bacteria - 366; Metazoa - 5368; Fungi - 1057; Plants - 2178; Viruses - 16; Other Eukaryotes - 1927 (source: NCBI BLink).
Protein Annotations
DNASU:819963eggNOG:ENOG410Y5WMeggNOG:KOG0379EMBL:AC009176
EMBL:AC013483EMBL:AF324668EMBL:AF329503EMBL:AY039559
EMBL:AY113872EMBL:BT000850EMBL:CP002686EnsemblPlants:AT3G07720
EnsemblPlants:AT3G07720.1entrez:819963Gene3D:2.120.10.80GeneID:819963
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0010043
Gramene:AT3G07720.1hmmpanther:PTHR23244hmmpanther:PTHR23244:SF276HOGENOM:HOG000217506
IntAct:Q9S7W4InterPro:IPR006652InterPro:IPR015915KEGG:ath:AT3G07720
OMA:SPRGCHAPfam:PF01344Pfam:PF13415Pfam:PF13418
PhylomeDB:Q9S7W4Proteomes:UP000006548RefSeq:NP_566316.1SMR:Q9S7W4
STRING:3702.AT3G07720.1SUPFAM:0052715TAIR:AT3G07720UniGene:At.18342
UniProt:Q9S7W4
Coordinates (TAIR10) chr3:+:2465439..2467033
Molecular Weight (calculated) 35687.80 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.35
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATPMEGKW VQLKQKGTGP GARSSHAIAL VGNKMYAFGG EFQPRVPVDN QLYVFDLETQ TWSIQEASGD APPPRVGVAM AAVGPIIYFF GGRDSTHQEL
101: NELYCFNTLT NQWKLLSSGE TGPQNRSYHS ITADSQNVYV FGGCGVDGRL NDLWAYNVVD QKWIKFPSPG EACRGRGGPG LEVVQGKIWV VYGFAGEEAD
201: DVHCFDIAKG EWKEVETKGE KPSARSVFST AVVGKQILIS GGEIDPSDLG HMGAGCFTGD AYGLDTETLE WRKWEDGVGS VEHPGPRGWC AFAAGSRDGK
301: QGLLVYGGNS PSNDRLDDIF FFTPNTLLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)