suba logo
AT1G09560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:14617066 (2003): nucleus
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : germin-like protein 5
Curator
Summary (TAIR10)
germin-like protein (GLP5)
Computational
Description (TAIR10)
germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUISeggNOG:ENOG410YCIHEMBL:AC003970EMBL:AF324678
EMBL:AF326875EMBL:AF339696EMBL:CP002684EMBL:U75191
EMBL:U75198EMBL:U75199EMBL:U75200EnsemblPlants:AT1G09560
EnsemblPlants:AT1G09560.1entrez:837482Gene3D:2.60.120.10GeneID:837482
Genevisible:P94014GO:GO:0005618GO:GO:0005634GO:GO:0009409
GO:GO:0009506GO:GO:0010497GO:GO:0030145GO:GO:0033609
GO:GO:0045735GO:GO:0046564GO:GO:0048046GO:GO:2000280
Gramene:AT1G09560.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF39HOGENOM:HOG000235000
InParanoid:P94014InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051
InterPro:IPR014710InterPro:IPR019780KEGG:ath:AT1G09560OMA:RTISQGD
PaxDb:P94014Pfam:P94014Pfam:PF00190PIR:C86229
PRIDE:P94014PRINTS:PR00325PRO:PR:P94014PROSITE:PS00725
ProteinModelPortal:P94014Proteomes:UP000006548RefSeq:NP_172427.1scanprosite:PS00725
SMART:SM00835SMR:P94014STRING:3702.AT1G09560.1SUPFAM:SSF51182
TAIR:AT1G09560tair10-symbols:GLP5UniGene:At.11328UniGene:At.70044
UniProt:P94014
Coordinates (TAIR10) chr1:+:3093896..3094639
Molecular Weight (calculated) 22869.60 Da
IEP (calculated) 8.75
GRAVY (calculated) 0.18
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPTLTLLL LLTTVSFFIS SSADPDMLQD LCVADLPSGI KINGFPCKDA ATVTSADFFS QGLAKPGLTN NTFGALVTGA NVMTIPGLNT LGVSLSRIDY
101: APGGLNPPHT HPRATEVVFV LEGTLDVGFL TTANKLISQS LKKGDVFAFP KGLVHFQKNN GDVPASVIAA FNSQLPGTQS LGATLFGSTP PVPDNILAQA
201: FQTSPGTVKH IKSKFQPKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)