AT2G17120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : lysm domain GPI-anchored protein 2 precursor | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
lysm domain GPI-anchored protein 2 precursor (LYM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: lysm domain GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has 636 Blast hits to 591 proteins in 145 species: Archae - 0; Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:7459156..7460648 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37741.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: METSCFTLLG LLVSLSFFLT LSAQMTGNFN CSGSTSTCQS LVGYSSKNAT TLRNIQTLFA VKNLRSILGA NNLPLNTSRD QRVNPNQVVR VPIHCSCSNG 101: TGVSNRDIEY TIKKDDILSF VATEIFGGLV TYEKISEVNK IPDPNKIEIG QKFWIPLPCS CDKLNGEDVV HYAHVVKLGS SLGEIAAQFG TDNTTLAQLN 201: GIIGDSQLLA DKPLDVPLKA CSSSVRKDSL DAPLLLSNNS YVFTANNCVK CTCDALKNWT LSCQSSSEIK PSNWQTCPPF SQCDGALLNA SCRQPRDCVY 301: AGYSNQTIFT TASPACPDSA GPDNYASTLS SSFNFVIVLI QCALLCLCLL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)