suba logo
AT2G17120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 12805588
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31541795 (2020): plasma membrane
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:26091700 (2015): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lysm domain GPI-anchored protein 2 precursor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lysm domain GPI-anchored protein 2 precursor (LYM2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: lysm domain GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has 636 Blast hits to 591 proteins in 145 species: Archae - 0; Bacteria - 285; Metazoa - 0; Fungi - 0; Plants - 336; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFUJeggNOG:ENOG410XV98EMBL:AF428464EMBL:AY056221
EMBL:AY088373EMBL:AY125560EMBL:CP002685EnsemblPlants:AT2G17120
EnsemblPlants:AT2G17120.1entrez:816217Gene3D:3.10.350.10GeneID:816217
Genevisible:O23006GO:GO:0005886GO:GO:0006952GO:GO:0008061
GO:GO:0009506GO:GO:0031225GO:GO:0046658Gramene:AT2G17120.1
hmmpanther:PTHR33734hmmpanther:PTHR33734:SF5HOGENOM:HOG000239699InParanoid:O23006
InterPro:IPR018392iPTMnet:O23006KEGG:ath:AT2G17120OMA:PHREVAG
PaxDb:O23006Pfam:O23006Pfam:PF01476PhylomeDB:O23006
PIR:C84548PRIDE:O23006PRO:PR:O23006PROSITE:PS51782
ProteinModelPortal:O23006Proteomes:UP000006548RefSeq:NP_565406.1SMART:SM00257
SMR:O23006STRING:3702.AT2G17120.1TAIR:AT2G17120tair10-symbols:LYM2
TMHMM:TMhelixUniGene:At.12294UniGene:At.48484UniProt:O23006
Coordinates (TAIR10) chr2:+:7459156..7460648
Molecular Weight (calculated) 37741.00 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.04
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: METSCFTLLG LLVSLSFFLT LSAQMTGNFN CSGSTSTCQS LVGYSSKNAT TLRNIQTLFA VKNLRSILGA NNLPLNTSRD QRVNPNQVVR VPIHCSCSNG
101: TGVSNRDIEY TIKKDDILSF VATEIFGGLV TYEKISEVNK IPDPNKIEIG QKFWIPLPCS CDKLNGEDVV HYAHVVKLGS SLGEIAAQFG TDNTTLAQLN
201: GIIGDSQLLA DKPLDVPLKA CSSSVRKDSL DAPLLLSNNS YVFTANNCVK CTCDALKNWT LSCQSSSEIK PSNWQTCPPF SQCDGALLNA SCRQPRDCVY
301: AGYSNQTIFT TASPACPDSA GPDNYASTLS SSFNFVIVLI QCALLCLCLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)