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AT3G51890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24030099 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Clathrin light chain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin light chain protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin light chain (InterPro:IPR000996); BEST Arabidopsis thaliana protein match is: Clathrin light chain protein (TAIR:AT2G40060.1); Has 358 Blast hits to 358 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 68; Plants - 116; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTJMeggNOG:ENOG41107SGEMBL:AF049236EMBL:AK228229
EMBL:CP002686EnsemblPlants:AT3G51890EnsemblPlants:AT3G51890.1entrez:824352
GeneID:824352Genevisible:F4J5M9GO:GO:0005198GO:GO:0006886
GO:GO:0030125GO:GO:0030130GO:GO:0030132GO:GO:0032050
GO:GO:0072583Gramene:AT3G51890.1hmmpanther:PTHR10639hmmpanther:PTHR10639:SF10
HOGENOM:HOG000241126InParanoid:F4J5M9IntAct:F4J5M9InterPro:IPR000996
iPTMnet:F4J5M9KEGG:ath:AT3G51890ncoils:CoilOMA:YESRFQS
PANTHER:PTHR10639PaxDb:F4J5M9Pfam:F4J5M9Pfam:PF01086
PIR:T51160PRIDE:F4J5M9PRO:PR:F4J5M9Proteomes:UP000006548
RefSeq:NP_566956.4STRING:3702.AT3G51890.1TAIR:AT3G51890UniGene:At.11927
UniProt:F4J5M9
Coordinates (TAIR10) chr3:-:19249686..19250890
Molecular Weight (calculated) 29184.90 Da
IEP (calculated) 5.04
GRAVY (calculated) -1.07
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)