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AT4G23470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT1G63830.3); Has 7925 Blast hits to 4553 proteins in 452 species: Archae - 4; Bacteria - 911; Metazoa - 2683; Fungi - 783; Plants - 1518; Viruses - 367; Other Eukaryotes - 1659 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGQ0eggNOG:ENOG4111Q5UEMBL:AK175352EMBL:AK175512
EMBL:AK176121EMBL:AK176265EMBL:AK176490EMBL:AK220854
EMBL:AK230441EMBL:AY062834EMBL:AY081590EMBL:CP002687
EnsemblPlants:AT4G23470EnsemblPlants:AT4G23470.1entrez:828446ExpressionAtlas:Q8W458
GeneID:828446GO:GO:0016021Gramene:AT4G23470.1hmmpanther:PTHR31152
OMA:FRNVWHTPhylomeDB:Q8W458Proteomes:UP000006548RefSeq:NP_194078.2
STRING:3702.AT4G23470.1TAIR:AT4G23470TMHMM:TMhelixUniGene:At.32426
UniProt:Q8W458
Coordinates (TAIR10) chr4:+:12249289..12251079
Molecular Weight (calculated) 28428.30 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.28
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKQDMEKME LRKNFRNVWH TDLTHSIQND TPYCCFALWC APCASYLLRK RALYDDMSRY VCCAGYMPCS GRCGEAKCPQ LCLATEVFCC FANSVASTRF
101: LLQDEFQIQT TKCDNCIIGF MVCLSQVACI FSIVACIVGM DELSEASQIL TCCSDMVYCT VCACMQTQHK MEMDKRDGKF GPQPMAVPPA QQMSRFDQAT
201: PPAVGYPPQQ GYPPSGYPQH PPQGYPPSGY PQNPPPSAYS QYPPGAYPPP PAYPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)