suba logo
AT1G61250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : secretory carrier 3
Curator
Summary (TAIR10)
Encodes a putative secretory carrier membrane protein (SC3).
Computational
Description (TAIR10)
secretory carrier 3 (SC3); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: SCAMP (InterPro:IPR007273); BEST Arabidopsis thaliana protein match is: Secretory carrier membrane protein (SCAMP) family protein (TAIR:AT1G11180.1); Has 696 Blast hits to 694 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 383; Fungi - 14; Plants - 228; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
BioGrid:27641eggNOG:ENOG410XSJNeggNOG:KOG3088EMBL:AC002294
EMBL:AF225920EMBL:AY045788EMBL:AY079336EMBL:AY086742
EMBL:CP002684EnsemblPlants:AT1G61250EnsemblPlants:AT1G61250.1entrez:842418
ExpressionAtlas:Q9M5P2GeneID:842418Genevisible:Q9M5P2GO:GO:0005768
GO:GO:0005794GO:GO:0005802GO:GO:0005886GO:GO:0015031
GO:GO:0016020GO:GO:0016021GO:GO:0030658hmmpanther:PTHR10687
hmmpanther:PTHR10687:SF22HOGENOM:HOG000005901InParanoid:Q9M5P2InterPro:IPR007273
iPTMnet:Q9M5P2ncoils:CoilOMA:KQDQMRRPANTHER:PTHR10687
PaxDb:Q9M5P2Pfam:PF04144Pfam:Q9M5P2PhylomeDB:Q9M5P2
PRIDE:Q9M5P2PRO:PR:Q9M5P2Proteomes:UP000006548RefSeq:NP_176320.1
STRING:3702.AT1G61250.1SwissPalm:Q9M5P2TAIR:AT1G61250tair10-symbols:SC3
TMHMM:TMhelixUniGene:At.19956UniGene:At.44849UniProt:Q9M5P2
Coordinates (TAIR10) chr1:+:22586035..22588664
Molecular Weight (calculated) 32614.70 Da
IEP (calculated) 8.98
GRAVY (calculated) 0.19
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRYDPNPF AEEEEVNPFA NARGVPPASN SRLSPLPPEP VGFDYGRTVD IPLDRAGTQD LKKKEKELQA KEAELKRREQ DLKRKEDAAA RAGIVIEVKN
101: WPPFFPLIHH DIANEIPVHL QRLQYVTFAT YLGLVLCLFW NIIAVTTAWI KGEGVTIWLL ALIYFIAGVP GGYVLWYRPL YRAFRTDSAL SFGWFFLFYM
201: LHIAFCVFAA VAPPVVFKGK SLAGILPAID VLSGQAIVGI FYFIGFAFFC LESVVSIWVI QQVYMYFRGS GKQDQMRREA ARGALRAAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)