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AT5G25752.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22738221 (2012): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:18543065 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : rhomboid-like protein 11
Curator
Summary (TAIR10)
Chloroplast-localized rhomboid-like protein.
Computational
Description (TAIR10)
rhomboid-like protein 11 (RBL11); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT5G25640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:ENOG410IPNFeggNOG:ENOG4111G72EMBL:AC006601
EMBL:AK228048EMBL:BT006426EMBL:CP002688EnsemblPlants:AT5G25752
EnsemblPlants:AT5G25752.1entrez:832642Gene3D:1.20.1540.10GeneID:832642
GO:GO:0004252GO:GO:0009507GO:GO:0009706GO:GO:0016021
GO:GO:0016485GO:GO:0080140Gramene:AT5G25752.1hmmpanther:PTHR22936
hmmpanther:PTHR22936:SF32HOGENOM:HOG000241269InParanoid:Q84MB5InterPro:IPR002610
InterPro:IPR022764KEGG:ath:AT5G25752MEROPS:S54.025OMA:QSVNHIA
PANTHER:PTHR22936PaxDb:Q84MB5Pfam:PF01694PhylomeDB:Q84MB5
PRIDE:Q84MB5PRO:PR:Q84MB5ProteinModelPortal:Q84MB5Proteomes:UP000006548
RefSeq:NP_680221.1STRING:3702.AT5G25752.1SUPFAM:SSF144091TAIR:AT5G25752
tair10-symbols:ATRBL11tair10-symbols:RBL11TMHMM:TMhelixUniGene:At.44059
UniProt:Q84MB5
Coordinates (TAIR10) chr5:-:8951503..8953323
Molecular Weight (calculated) 31594.40 Da
IEP (calculated) 10.34
GRAVY (calculated) 0.16
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQLLHLHRL SLPQSSLRFR FPPLHRRRAA SSPTNSTQPP LQFRPLTVSR SQITCRFSQS DITPQFELDK AKDNRKPQKR ANGIFWIILI NLGIYLADHF
101: FQVRGIKSLY LYHNFPAWYQ FVTATFCHAN WNHLSSNLFF LYIFGKLVEE EEGNFGLWLS YLFTGVGANL VSWLVLPRNA VSVGASGAVF GLFAISVLVK
201: MSWDWRKILE VLILGQFVIE RVMEAAQASA GLSGTIYGGY SLQTVNHIAH LSGALVGVVL VWLLSKFPSA SMDQDVKKSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)