suba logo
AT1G76970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Target of Myb protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT1G21380.1); Has 1693 Blast hits to 1685 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 883; Fungi - 448; Plants - 280; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AK221351EMBL:BT010453
EMBL:CP002684EnsemblPlants:AT1G76970EnsemblPlants:AT1G76970.1entrez:844033
Gene3D:1.20.58.160Gene3D:1.25.40.90GeneID:844033GO:GO:0005622
GO:GO:0006886Gramene:AT1G76970.1hmmpanther:PTHR13856hmmpanther:PTHR13856:SF95
HOGENOM:HOG000237674InterPro:IPR002014InterPro:IPR004152InterPro:IPR008942
InterPro:IPR014645KEGG:ath:AT1G76970OMA:SKTETNPPfam:PF00790
Pfam:PF03127Pfscan:PS50179Pfscan:PS50909PhylomeDB:Q6NQK0
PIRSF:PIRSF036948PRO:PR:Q6NQK0PROSITE:PS50179PROSITE:PS50909
Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_177823.2SMART:SM00288
SMR:Q6NQK0STRING:3702.AT1G76970.1SUPFAM:SSF48464SUPFAM:SSF89009
TAIR:AT1G76970UniGene:At.21498UniGene:At.34570UniGene:At.67646
UniProt:Q6NQK0
Coordinates (TAIR10) chr1:-:28922841..28924854
Molecular Weight (calculated) 49257.20 Da
IEP (calculated) 4.75
GRAVY (calculated) -0.72
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MANDAAACAE RATNDMLIGP DWAINIELCD LINMDPSQAK EAVKVLKKRL GSKNSKVQIL ALYALETLSK NCGENVYQLI IDRGLLNDMV KIVKKKPELN
101: VREKILTLLD TWQEAFGGRG GRYPQYYNAY NDLRSAGIEF PPRTESSLSF FTPPQTQPDE DAAIQASLQG DDASSLSLEE IQSAEGSVDV LMDMLGAHDP
201: GNPESLKEEV IVDLVEQCRT YQRRVMTLVN TTTDEELLCQ GLALNDNLQH VLQRHDDIAN VGSVPSNGRN TRAPPPVQIV DINHDDEDDE SDDEFARLAH
301: RSSTPTRRPV HGSDSGMVDI LSGDVYKPQG NSSSQGVKKP PPPPPHTSSS SSSPVFDDAS PQQSKSSEVI RNLPPPPSRH NQRQQFFEHH HSSSGSDSSY
401: EGQTRNLSLT SSEPQKEEKP EDLLFKDLVE FAKTRSSKAN NNNRSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)