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AT1G76980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J14EeggNOG:ENOG410ZBZ1EMBL:AC002291EMBL:BT010704
EMBL:BT010976EMBL:CP002684EnsemblPlants:AT1G76980EnsemblPlants:AT1G76980.1
entrez:844034ExpressionAtlas:O49284GeneID:844034Gramene:AT1G76980.1
hmmpanther:PTHR34193hmmpanther:PTHR34193:SF1HOGENOM:HOG000114714OMA:QRELMDM
PhylomeDB:O49284PIR:G96798Proteomes:UP000006548RefSeq:NP_177824.1
TAIR:AT1G76980UniGene:At.49240UniProt:O49284
Coordinates (TAIR10) chr1:-:28926466..28927242
Molecular Weight (calculated) 29243.40 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.88
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIFDLSSKS FDSHLNFPRT FDDHSDSGVC SPPLWRTSPP KSPAHLHNNY QNLSPVTKAQ VIARGQRELM DMVSKMPESC YELSLKDLVE VNTEEEKVFD
101: EMPQREKKPR KVVRKTKSDK WVDPIRNGGV NNSGFLLKLV FPVSLGAKKK TNKKKDNDDD DSSVTSKRSW ISSPRPSISD LSMKREDKDW WKDGLSESRR
201: SQSVVSRINS GSSKSSGGSS SRSNSDRSRN SLRYPQTLAN LFRNPLRCFA SSSRICFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)