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AT1G30900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Predictors External Curations
AmiGO : golgi 10888666
SwissProt : cytosol 16381842
SwissProt : golgi 16381842
SwissProt : vacuole 16381842
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24344820 (2014): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VACUOLAR SORTING RECEPTOR 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VACUOLAR SORTING RECEPTOR 6 (VSR6); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 5 (TAIR:AT2G34940.1); Has 12335 Blast hits to 5905 proteins in 215 species: Archae - 2; Bacteria - 51; Metazoa - 11201; Fungi - 6; Plants - 368; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHDNeggNOG:ENOG41105IFEMBL:AC000107EMBL:CP002684
EnsemblPlants:AT1G30900EnsemblPlants:AT1G30900.1entrez:839974GeneID:839974
Genevisible:Q9FYH7GO:GO:0000139GO:GO:0005509GO:GO:0015031
GO:GO:0016021GO:GO:0030665GO:GO:0031902Gramene:AT1G30900.1
hmmpanther:PTHR22765hmmpanther:PTHR22765:SF56HOGENOM:HOG000241019InParanoid:Q9FYH7
InterPro:IPR001881InterPro:IPR003137InterPro:IPR018097KEGG:ath:AT1G30900
OMA:KEGTEPRPaxDb:Q9FYH7Pfam:PF02225Pfam:Q9FYH7
PIR:G86434PRIDE:Q9FYH7PRO:PR:Q9FYH7PROSITE:PS00010
PROSITE:PS00022PROSITE:PS01186PROSITE:PS01187ProteinModelPortal:Q9FYH7
Proteomes:UP000006548RefSeq:NP_174375.1scanprosite:PS01187SMART:SM00179
SMR:Q9FYH7STRING:3702.AT1G30900.1SUPFAM:SSF52025TAIR:AT1G30900
tair10-symbols:BP80-3;3tair10-symbols:VSR3;3tair10-symbols:VSR6TMHMM:TMhelix
UniGene:At.51844UniProt:Q9FYH7
Coordinates (TAIR10) chr1:+:10997275..11000543
Molecular Weight (calculated) 70261.40 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.37
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC
101: YFALKVWNGQ QSGVAAVLVA DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES LPHPDERVEY ELWTNTNDEC
201: GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW
301: DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE
401: RTEPGICLSG DIETNECLEA NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE TKKGLTFSAC SNLETSGCRC
501: PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI
601: MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)