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AT3G54960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : plastid 15028209
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24970193 (2013): endoplasmic reticulum
  • PMID:12837943 (2003): endoplasmic reticulum
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PDI-like 1-3
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational
Description (TAIR10)
PDI-like 1-3 (PDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-4 (TAIR:AT5G60640.1); Has 26348 Blast hits to 17789 proteins in 2915 species: Archae - 261; Bacteria - 12527; Metazoa - 4679; Fungi - 1534; Plants - 2199; Viruses - 17; Other Eukaryotes - 5131 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G54960-MONOMERBioCyc:ARA:GQT-1367-MONOMERBioGrid:9977EC:5.3.4.1
eggNOG:COG0526eggNOG:KOG0190EMBL:AJ271376EMBL:AK318844
EMBL:AL049655EMBL:AL132970EMBL:AY093115EMBL:BT000172
EMBL:CP002686EnsemblPlants:AT3G54960EnsemblPlants:AT3G54960.1entrez:824661
Gene3D:3.40.30.10GeneID:824661Genevisible:Q8VX13GO:GO:0003756
GO:GO:0005774GO:GO:0005783GO:GO:0005788GO:GO:0006457
GO:GO:0009507GO:GO:0034976GO:GO:0045454hmmpanther:PTHR18929
hmmpanther:PTHR18929:SF74HOGENOM:HOG000162459InParanoid:Q8VX13IntAct:Q8VX13
InterPro:IPR005792InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937
KEGG:ath:AT3G54960KO:K09580OMA:REQDTIVPaxDb:Q8VX13
Pfam:PF00085Pfam:PF13848Pfam:Q8VX13Pfscan:PS51352
PhylomeDB:Q8VX13PIR:T06724PRIDE:Q8VX13PRO:PR:Q8VX13
PROSITE:PS00014PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q8VX13
Proteomes:UP000006548RefSeq:NP_001118842.1RefSeq:NP_191056.2scanprosite:PS00194
SMR:Q8VX13STRING:3702.AT3G54960.1SUPFAM:SSF52833TAIR:AT3G54960
tair10-symbols:ATPDI1tair10-symbols:ATPDIL1-3tair10-symbols:PDI1tair10-symbols:PDIL1-3
TIGRfam:TIGR01130TIGRFAMs:TIGR01130UniGene:At.22358UniProt:Q8VX13
Coordinates (TAIR10) chr3:-:20363514..20366822
Molecular Weight (calculated) 64215.50 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.32
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSTSISL LLFVSFILLL VNSRAENASS GSDLDEELAF LAAEESKEQS HGGGSYHEEE HDHQHRDFEN YDDLEQGGGE FHHGDHGYEE EPLPPVDEKD
101: VAVLTKDNFT EFVGNNSFAM VEFYAPWCGA CQALTPEYAA AATELKGLAA LAKIDATEEG DLAQKYEIQG FPTVFLFVDG EMRKTYEGER TKDGIVTWLK
201: KKASPSIHNI TTKEEAERVL SAEPKLVFGF LNSLVGSESE ELAAASRLED DLSFYQTASP DIAKLFEIET QVKRPALVLL KKEEEKLARF DGNFTKTAIA
301: EFVSANKVPL VINFTREGAS LIFESSVKNQ LILFAKANES EKHLPTLREV AKSFKGKFVF VYVQMDNEDY GEAVSGFFGV TGAAPKVLVY TGNEDMRKFI
401: LDGELTVNNI KTLAEDFLAD KLKPFYKSDP LPENNDGDVK VIVGNNFDEI VLDESKDVLL EIYAPWCGHC QSFEPIYNKL GKYLKGIDSL VVAKMDGTSN
501: EHPRAKADGF PTILFFPGGN KSFDPIAVDV DRTVVELYKF LKKHASIPFK LEKPATPEPV ISTMKSDEKI EGDSSKDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)