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AT1G21750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : vacuole 18676877
SwissProt : endoplasmic reticulum 16381842
TAIR : plastid 15028209
TAIR : vacuole 18676877
TAIR : endoplasmic reticulum 16618929
TAIR : vacuole 15539469
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24970193 (2013): endoplasmic reticulum
  • PMID:18931141 (2008): endoplasmic reticulum
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24393051 (2015): endoplasmic reticulum
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
FP Images

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-21750
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PDI-like 1-1
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational
Description (TAIR10)
PDI-like 1-1 (PDIL1-1); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-2 (TAIR:AT1G77510.1); Has 31573 Blast hits to 17834 proteins in 2924 species: Archae - 337; Bacteria - 15428; Metazoa - 5451; Fungi - 1644; Plants - 2422; Viruses - 29; Other Eukaryotes - 6262 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G21750-MONOMERBioCyc:ARA:GQT-2441-MONOMERBioGrid:24018EC:5.3.4.1
eggNOG:COG0526eggNOG:KOG0190EMBL:AC007727EMBL:AY035096
EMBL:AY063059EMBL:CP002684EnsemblPlants:AT1G21750EnsemblPlants:AT1G21750.1
entrez:838779ExpressionAtlas:Q9XI01Gene3D:3.40.30.10GeneID:838779
Genevisible:Q9XI01GO:GO:0000326GO:GO:0000327GO:GO:0003756
GO:GO:0005773GO:GO:0005783GO:GO:0005788GO:GO:0006457
GO:GO:0009505GO:GO:0009507GO:GO:0009579GO:GO:0009651
GO:GO:0009735GO:GO:0009793GO:GO:0010043GO:GO:0016020
GO:GO:0034976GO:GO:0043067GO:GO:0045454GO:GO:0048316
hmmpanther:PTHR18929hmmpanther:PTHR18929:SF108HOGENOM:HOG000162459InParanoid:Q9XI01
IntAct:Q9XI01InterPro:IPR005788InterPro:IPR005792InterPro:IPR012336
InterPro:IPR013766InterPro:IPR017937iPTMnet:Q9XI01KEGG:ath:AT1G21750
KO:K09580OMA:REFATQYPaxDb:Q9XI01Pfam:PF00085
Pfam:PF13848Pfam:Q9XI01Pfscan:PS51352PhylomeDB:Q9XI01
PIR:B86351PRIDE:Q9XI01PRO:PR:Q9XI01PROSITE:PS00014
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q9XI01Proteomes:UP000006548
RefSeq:NP_173594.1scanprosite:PS00194SMR:Q9XI01STRING:3702.AT1G21750.1
SUPFAM:SSF52833SWISS-2DPAGE:Q9XI01SwissPalm:Q9XI01TAIR:AT1G21750
tair10-symbols:ATPDI5tair10-symbols:ATPDIL1-1tair10-symbols:PDI5tair10-symbols:PDIL1-1
TIGRfam:TIGR01126TIGRfam:TIGR01130TIGRFAMs:TIGR01126TIGRFAMs:TIGR01130
UniGene:At.24814UniProt:Q9XI01
Coordinates (TAIR10) chr1:+:7645767..7648514
Molecular Weight (calculated) 55604.30 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.33
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)