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AT5G43060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Granulin repeat cysteine protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G43060-MONOMEReggNOG:COG4870eggNOG:KOG1543eggNOG:KOG4296
EMBL:AB008267EMBL:AY062608EMBL:AY114661EMBL:CP002688
EnsemblPlants:AT5G43060EnsemblPlants:AT5G43060.1entrez:834321GeneID:834321
GO:GO:0004197GO:GO:0005615GO:GO:0005764GO:GO:0005773
GO:GO:0005783GO:GO:0005829GO:GO:0009651GO:GO:0051603
Gramene:AT5G43060.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF344HOGENOM:HOG000230773
InterPro:IPR000118InterPro:IPR000169InterPro:IPR000668InterPro:IPR013128
InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661KEGG:ath:AT5G43060
MEROPS:C01.A12OMA:ISYDENHPANTHER:PTHR12411Pfam:PF00112
Pfam:PF00396Pfam:PF08246PRINTS:PR00705PROSITE:PS00139
PROSITE:PS00639PROSITE:PS00640Proteomes:UP000006548RefSeq:NP_568620.1
scanprosite:PS00139scanprosite:PS00639scanprosite:PS00640SMART:SM00277
SMART:SM00645SMART:SM00848STRING:3702.AT5G43060.1SUPFAM:SSF54001
SUPFAM:SSF57277TAIR:AT5G43060UniGene:At.24130UniProt:Q9FMH8
Coordinates (TAIR10) chr5:-:17269784..17272117
Molecular Weight (calculated) 51206.50 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.46
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)