suba logo
AT2G43040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.368
cytosol 0.332
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.
Computational
Description (TAIR10)
no pollen germination 1 (NPG1); CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: no pollen germination related 2 (TAIR:AT4G28600.1); Has 573 Blast hits to 561 proteins in 155 species: Archae - 29; Bacteria - 89; Metazoa - 223; Fungi - 37; Plants - 141; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ09eggNOG:KOG4162EMBL:AF474176EMBL:BT046199
EMBL:CP002685EnsemblPlants:AT2G43040EnsemblPlants:AT2G43040.1entrez:818906
Gene3D:1.25.40.10GeneID:818906GO:GO:0005516Gramene:AT2G43040.1
hmmpanther:PTHR23083hmmpanther:PTHR23083:SF39HOGENOM:HOG000238907InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT2G43040OMA:CLANKSK
Pfam:PF07719Pfam:PF13176Pfscan:PS50005Pfscan:PS50293
PhylomeDB:Q8GZN1PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548
RefSeq:NP_850382.1SMART:SM00028SMR:Q8GZN1STRING:3702.AT2G43040.1
SUPFAM:SSF48452TAIR:AT2G43040tair10-symbols:NPG1UniGene:At.28215
UniGene:At.36939UniProt:Q8GZN1
Coordinates (TAIR10) chr2:-:17896049..17898524
Molecular Weight (calculated) 77989.20 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.26
Length 704 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGNQSADFS EKGEDEIVRQ LCANGICMKT TEVEAKLDEG NIQEAESSLR EGLSLNFEEA RALLGRLEYQ RGNLEGALRV FEGIDLQAAI QRLQVSVPLE
101: KPATKKNRPR EPQQSVSQHA ANLVLEAIYL KAKSLQKLGR ITEAAHECKS VLDSVEKIFQ QGIPDAQVDN KLQETVSHAV ELLPALWKES GDYQEAISAY
201: RRALLSQWNL DNDCCARIQK DFAVFLLHSG VEASPPSLGS QIEGSYIPRN NIEEAILLLM ILLKKFNLGK AKWDPSVFEH LTFALSLCSQ TAVLAKQLEE
301: VMPGVFSRIE RWNTLALSYS AAGQNSAAVN LLRKSLHKHE QPDDLVALLL AAKLCSEEPS LAAEGTGYAQ RAINNAQGMD EHLKGVGLRM LGLCLGKQAK
401: VPTSDFERSR LQSESLKALD GAIAFEHNNP DLIFELGVQY AEQRNLKAAS RYAKEFIDAT GGSVLKGWRF LALVLSAQQR FSEAEVVTDA ALDETAKWDQ
501: GPLLRLKAKL KISQSNPTEA VETYRYLLAL VQAQRKSFGP LRTLSQMEED KVNEFEVWHG LAYLYSSLSH WNDVEVCLKK AGELKQYSAS MLHTEGRMWE
601: GRKEFKPALA AFLDGLLLDG SSVPCKVAVG ALLSERGKDH QPTLPVARSL LSDALRIDPT NRKAWYYLGM VHKSDGRIAD ATDCFQAASM LEESDPIESF
701: STIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)