AT5G42880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.916 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF827) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT1G45545.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17191758..17194091 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84528.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||
| Length | 751 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLGDDKDSDD LNLFLNAIGE AGDEEGPTSF NDIDFLTFDD EDLHNPFQDC ETSPINEPPK VYVAPRVMIS HQDSFSEDSR TDVIEDARIL PASPRLRVPA 101: SPRAFVYPRS VESPRFGSPR SVESPCFGSP IGVIDTASPF ESVREAVSKF GGITDWKAHK IQTIERRKMV DEELEKIQEA MPEYKREAEL AEEAKYDALE 201: ELENTKGLIE ELKLELEKAE KEEQQAKQDS ELAQMRVEEM EKGVANEASV AVKTQLEVAK ARQVSATSEL RSVREEIEMV SNEYKDMLRE KELAAERADI 301: AVLEAKEIER TMDGLSIELI ATKELLESVH TAHLEAEEKR FSVAMARDQD VYNWEKELKM VENDIERLNQ EVRAADDVKA KLETASALQH DLKTELAAFT 401: DISSGNLLLE KNDIHAAVES ARRELEEVKA NIEKAASEVK KLKIIAGSLQ SELGRERQDL EETKQKESTG LARTNDKDAG EELVETAKKL EQATKEAEDA 501: KALATASRDE LRMAKELSEQ AKRGMSTIES RLVEAKKEME AARASEKLAL AAIKALQETE SSQRFEEINN SPRSIIISVE EYYELSKQAL ESEEEANTRL 601: SEIVSQIEVA KEEESRILEK LEEVNREMSV RKAELKEANG KAEKARDGKL GMEQELRKWR SENGKRRTDE GREPEKSPTR SSTEGRNKEN GFGQSKSFAF 701: GEQGSSSNNT GGSTTTNNNN LTPETKKKKK KLSLFPKVFM FLSRKKSHSH K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)