AT2G02480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AAA-type ATPase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
STICHEL mutant shows trichomes with fewer than normal branches. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
STICHEL (STI); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity, ATP binding; INVOLVED IN: trichome differentiation, trichome branching; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA polymerase III, subunit gamma/ tau (InterPro:IPR012763); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G14460.1); Has 15360 Blast hits to 15082 proteins in 2818 species: Archae - 391; Bacteria - 8894; Metazoa - 533; Fungi - 525; Plants - 301; Viruses - 38; Other Eukaryotes - 4678 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:661093..665337 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135311.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1218 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGSRVSDLS KLHLKKELTQ IRKAGRVLRD PGTTSSWKSP LDSSRSVALL ETPASRNGGS SSQFPIRGES STNRRGKEKK VFLYNWKTQK SSSEKSGLAK 0101: NGKEEEEEEE DASSWTQASV NDDDDVSDAR NGGDSYRREI QSASMGFRCR DTNLASQGVS KMRKSNVGSC KKKSKKKISS SRLDCLSKYQ PRDDIVARNC 0201: NAGSDDTEEE LSNSEDLRKV TGASPLLLKL KQKNWSRSSS RLLRANNRKE DSSCTYNSTP ALSTSSYNMY AVRNPSTVGS WDGTTTSVND GDDELDDNLD 0301: LPGRQGCGIP CYWTKKAMKH RGGCRSCCSP SFSDTLRRTG SSILCGSQSV YRRHNRHSSG GYSKQKIACR SAQGVLPLLS YGGDGRGGSS LGTGLSDDEL 0401: STNYGELDLE AQSRLDGRRW STSYRSQDGL EAVALDGEEE EGSTPETIRS FSQKYRPMFF EELIGQSIVV QSLMNAVKRS RIAPVYLFQG PRGTGKTSTA 0501: RIFSAALNCV ATEEMKPCGY CKECNDFMSG KSKDFWELDG ANKKGADKVR YLLKNLPTIL PRNSSMYKVF VIDECHLLPS KTWLSFLKFL ENPLQKVVFI 0601: FITTDLENVP RTIQSRCQKF LFDKLKDSDI VVRLKKIASD ENLDVDLHAL DLIAMNADGS LRDAETMLEQ LSLLGKRITT ALVNELVGVV SDEKLLELLE 0701: LALSSDTAET VKRARELLDL GADPIVLMSQ LASLIMDIIA GTYKVVDEKY SNAFFDGRNL TEADMEGLKH ALKLLSEAEK QLRVSNDRST WFTATLLQLG 0801: SMPSPGTTHT GSSRRQSSRA TDDDPASVSR EVMAYKQRIG GLHFSKSASP ASVIKRNGNH SHEAKPFSRV IDNNCYKSSS SSQMIESEGS IASHENSIAS 0901: TMMLNQRSSE KLNDIWRKCI ERCHSKTLRQ LLYTHGKLIS ISEVEGILVA YIAFGENDIK LRAERFLSSI TNSIEMVLRR SVEVRIILLP ETELLVVPHQ 1001: TRKPEMTNKS GHLNNIAGLN AETDVEVGSS VESRSKLPMQ RIESIIREQR LETAWLQTAD KDTPGSIIRV KPERNQILPQ EDTYRQTNVA SAISSSGLTT 1101: HQWVDELNNE VKLLKIGDNG ELQENLTGTR GQHCPLSPSL LHDTNFGNNK DNLGGYESGS GRVGCNILFC WNTKKTQRRS KSKQVKGTPV RSRRNRKSRF 1201: SLFNGCAKPR KAEGNIRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)