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AT5G47490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.929
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RGPR-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RGPR-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: RGPR-related (TAIR:AT5G47480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111J6DeggNOG:KOG1913EMBL:AB025628EMBL:CP002688
EnsemblPlants:AT5G47490EnsemblPlants:AT5G47490.1entrez:834799GeneID:834799
Genevisible:Q9FGK8GO:GO:0000139GO:GO:0005783GO:GO:0015031
GO:GO:0048208Gramene:AT5G47490.1hmmpanther:PTHR13402HOGENOM:HOG000083205
InParanoid:Q9FGK8InterPro:IPR024298InterPro:IPR024340InterPro:IPR024880
iPTMnet:Q9FGK8KEGG:ath:AT5G47490OMA:ASQSTMAPANTHER:PTHR13402
PaxDb:Q9FGK8Pfam:PF12931Pfam:PF12932Pfam:Q9FGK8
PhylomeDB:Q9FGK8PRIDE:Q9FGK8PRO:PR:Q9FGK8ProteinModelPortal:Q9FGK8
Proteomes:UP000006548RefSeq:NP_199560.1STRING:3702.AT5G47490.1TAIR:AT5G47490
UniGene:At.29888UniProt:Q9FGK8
Coordinates (TAIR10) chr5:+:19264675..19270487
Molecular Weight (calculated) 147824.00 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.56
Length 1361 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASASQFLLE DQTDEDFFDK LVDDAYSPTE AQASSSVTEL KFDDESDSDD IRAFSNLSIG KDPLGGGDGT LNEAILGNDV ANEGASGSVG EDEPSSIAPE
0101: AVQFPHSDAR ELRDDEMRSE VADMPLSETA KECTIVNEPG IPGVKELDWG SFDADLSVND GRGFGSYSDF FTELDATAGN LQGKADVAVA TGGNLVANDT
0201: NNTSVGFEQH QGQLHHDSAS GQYVDNSQSW ENLYPGWKYD ASTGQWFQVD GHDASMNSQE SYENSTSNWE NVAANNSDVA YQRQSTASAV AGTVENVSTW
0301: NQVSQVSNGY PEHMVFDSQY PGWYYDTIAQ EWRSLDSYNQ AFQTTGQAND QQVQNGNSFT AVDHSRESNV HDVYDKNQIL RTQKFDIQSQ HGSWDQSYYD
0401: KNQQATNMWQ PENAGAAEAA VTPASLSNSG GNQQVNNLYS TGPVAEQFKP YESGVQSFIP QHMNVANVTQ NGPMSFSNGF YSRQESVDDA PQSFQSSQLF
0501: SPSAGRSSDG RPPHALVNFG FGGKLILMKD DSGSLQNSSF GSQKGTGGSS ISVLNLAEVI SGSASYSSLG ENSLSYFSCL DQQSLPGPLV GGNVGSKDLH
0601: KWLDERILNC ESSYMDFSRG KLLKMLLSLL RISCQYYGKL RSPFGSDALQ KETDSAEAAV AKLFAIAKED GVQNGYAPIS QCLQHLPPES QMQVTASEVQ
0701: NLLASGRKME ALQCAQEGHL WGPALVIAAQ LGQQFYVDTV KQMALRQLVP GSPLRTLCLL VAGQPAEVFS TGSTSDISFP GSVNLPPQQP QFGCSSMLDS
0801: WEENLGIITA NRTTDDELVI THLGDCMWKE RGEIIAAHIC YLIADKNFDT YSDTARLCLV GADHWKYPRT YASPEAIQRT ELYEYSKTLG NSQYTLLTFQ
0901: PYKVMYAHML AEVGKLSTAQ KYCQAVLKCL KTGRSPEVEM WKQFVSSLEE RIRIHQQGGY TANLHPEKLV GVLLNFFGSK THRPVGGMPP PAPHSTKGNL
1001: QGNEYQHQQQ EATKLAYSQS VNTMSSLMPP ASVEPTHESG GSGRRMAVHT RSVSEPDFGR TPIQEMADSS KEKAVDGVTK LKSSGSVAGS RFSRFGFGIF
1101: KDTVGRVLAR SSKEAKLGAE NQFYYDDKLK RWVERGVEPP AEEAALPPPP TIGAFQNNSL GYENKSDMIP SNGNWSSGGP TPSENSSGIP PISHGSNQFS
1201: ARGRTGVRAR YVDTYNPPGR GNSHTMIPSP SVQTAKPPIP AKAKFFVPAA PASFSNDQAM EPAAAETRQE EISADEVVAS SGAPPPMMMQ RYPSMDNIQR
1301: NGLGISVNGD NHQPPTSRRT ASWSGNFNTS FTPPTSPSTF KPVLLNSSSS SLGEELQEVE L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)