AT1G67140.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : HEAT repeat-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SWEETIE (SWEETIE); FUNCTIONS IN: binding; INVOLVED IN: trehalose metabolic process, carbohydrate metabolic process, starch metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 8640 Blast hits to 5919 proteins in 625 species: Archae - 46; Bacteria - 1406; Metazoa - 3035; Fungi - 1212; Plants - 473; Viruses - 115; Other Eukaryotes - 2353 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:25101016..25117372 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 244266.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
| Length | 2221 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTKNIASDNV PLSRFGVLVA QLESIVASAS QKNPDPLLCF EILSDLISAI DEEPKESLLV TQRKCEDALY SLVTLGARRP VRHLASVAMA KIISNGDSIS 0101: IYSRASSLQG FLSDGKRSDP QRVAGAAQCL GELYRHFGKK ITSGLFETTS IVTKLVKFNE DFVRQEAFIL LHNALEGCGG TAAATAYSEA YRLITRFSTL 0201: DKSFVVRIAA ARCLKAFSNI GGPGLGTSEF DTLASYCVKG IEDSESSVRD AFAEALGSLL ALGMHPEAHV QPRGKGPFPP AKKLEGGLQR HLILPFTKAV 0301: GSRAKNTRFG LALSWVFFLQ AIRIRYLDSD SELQDYSLPI MDMLRGDSSI DAHALACVLY ILRVGVIDQM MEPSQRSFSV FLGKQLQSSN ASPSMKIVAL 0401: RALSYTLKTL GEVPHEFKEF FDDTVGAALS HFLDLVRVEA ALTLRALAEV DPTCVGGLTS FAVTTLNALR ESLSFEKGDK LKTDLASLHG QAATLAALVS 0501: ISPGLSLGYP ARLPRSVLEV SKKMLTESRR NVTVASSEKE AGWLLLSSLL NSMPKEEFGD QDFDILILWT DVFAGNPEHL IKQQAELKSM LSVWSAAIDA 0601: LTAFVRRFVS CNDGILLQPV LANLRSALSC VSTMANKRFS DVKTLVDILI IRILIAYQSI PDPLAYKSEH QQIIQLCTTP YRDPSGFEES SCLKSLLDKR 0701: DAWLGPWIPG RDWFEDELRY FQGGEDGLAP SVWESKVSSF PLPETVKKTL VNQMVLCFGI MFASQDSQGM LSLLSVIQQC LKAGKKQQWR TASLTNICAG 0801: LLAGLKALHA LRPQQLTTEV LSSGQAIFQN ILTEGDICAS QRRAACEGLG LLARLGNDIF TARMTRVLLG DLSGVTDPNY GGSIALALGC IHHSAGGMAL 0901: SSLVPATVNS VSSLTKTSVL GLKIWALHGL LLTIEAAGLS FVSHVQAALG LALDILLTEE SGWIDLSQGI GRLINAIVAV LGPELSPGSI LFSRCKSVIA 1001: EISSWQEIPT LLESVCFTQQ LILFAPQAVS VHIHVKNLLM TLASRQPIIR RLSVSTLRHL VEKDPVSVID EQIEDNLFQM LDEETDSEIG NLIRSTLIRL 1101: LYATCPSRPS RWMLICRNMA LAASAGRSAE TSIAENDPAY TRENLGDDDE DMVSSSSGKS IRANPDKDKT LRYRTRVFAA ECLSLLPEAV GNDAAHFDIL 1201: LARNLASNRQ SSGDWLVLQL QELISLAYQI STIQFENMRP IGVGLLSTIL EKFKLVADPE LPGHLLLEQY QAQLLSAVRT ALDANSGPVL LEAGLQLATK 1301: IMTSGIIRSD QVAVKRIFSL LSRPLNDFNE LYYPSFAEWV TSKIKIRLLA AHASLKCYIF TFLRKHHGEV PVEFEALLPM FSKSSDLLGR YWIQVLKGYS 1401: YICLCQNLKK SCSFLDEILP HTVSRRLQPC LEEAWPVILQ ALVLDAIPVN HSVEEFSDRS LISTHRMVTL EAEDFQFLWG FAVLVLFQGM HPASSMQVIP 1501: FSSAKIKSSG DSSINESSFQ GLKLYEIALP VFQSLSAGRF FSSGFLSIDL CQELLQVLSY SFHMDSSWDI LAVSVVQQIS QNCPKDFLES EEFAYSTIEL 1601: CLGYLFKILH RHNEISPDDG IWDNMLSPLF ISIKTLVKRF ELKHRLNSAP LAFLLSGYKC IRQVPTDAYL PKALEIVKST NDLLLELTRA SSQKPYTDGT 1701: NFAADSGFHL RAIFGACLHM VGDLTRDCIN GIQLVDSKRS GLRKLLQLKL VFCLEQLFSL AKLAYEFDCP VDETNTNSIC IVMLKSCQIS IAAVVKDSNV 1801: QVQATVLQVL KSLVQRYNNP EEKSFVILFV GELIGDIVSL MQRALLKPVN TESVVIAGEC LRFIMLLQTH SITDELQKGF MSLFLEVVLV VFSKTSDGVS 1901: QEVLELRNVA VRLVSHLAQL PSSAVHFKDV LLSLPVTHRQ QLQDIIRASV SKDSALAKPK SLVPAMDIKL PAPVVATPEK VTSTANMVKE EALSTMPTSF 2001: NQVSTVESGT DEEEEEEEDD DDDDWDTFQS FPASTNLEGS ESKTESVAEE EPDLPGRSSI QDDESNAEET DDQHLASDHA TDITREDSND KSKEVVEEET 2101: VEPCFTTRED SVDKSKEVEE ETVKPCLIED ALTSQNDKTS SGDHPVEINE QSVESKNLES ENIGTDIKLA STEVESPALD DLEPQQIQKS PEDESSKEHV 2201: GADVIVTEET IAENKSDVDY I |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)