AT5G54200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G15470.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:21993565..21997076 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93027.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||
| Length | 825 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKMMMMNRR RSNVVRFEAK KEDKVEEEDN NDDCFYESLD RVLSSCSCST SNSDYDSDPN VSDSIHDPTP FPVPMFTSGF ELWKSEPESV SERRIRLLRG 101: LGLSNEPDLP PASQLRSRSR RNSSHFSRSV PSDVLTSNHH GKCVLRSDVS GTDNVDREYT GSRMRNDGVD FISKEPMERS LRDIVEKENG RDVVLEEQMC 201: TIRNLDTGRE FVVNEVREDG MLERLKEVGT DRQLTLEEFE ICVGTSPIVL ELMRRQNVED VCKDSVDLDT NVSGSRVTKH RRRGSWLKSI KNVASSVTGY 301: KERRSTDDRD SPSERGGQRF SSATDDSRDM SFHDPERVKV RQYGKSCKEL TALFKSQEIQ AHKGSIWSIK FSLDGRYLAS AGEDCVIQIW KVVESERKGE 401: LLSMDKQEDG SINLFLLANG SPEPVSMSPK RRGRTSFSRK SVSLDNVLVP EAVFGLSEKP VCSFVGHLDD VLDLSWSKSQ HLLSSSMDKT VRLWDLSSKT 501: CLKVFSHSDY VTCIQFNPVD DNYFISGSLD AKVRIWSIPD HQVVDWNDLH EMVTAACYTP DGQGALVGSY KGTCCLYNTH DNKLQQRREI NLKNRKKKTH 601: HKKITGFQFV AGSSSEVLVT SADSRTRVVD GVDLVHKFKG FRNTNSQISA SLTSNGKFLV SASEDSNVYV WNYDSDSRAG RSKRVTVTNS YENFYCRDVS 701: VAAPWPGKIS NNHTNNSPEQ SSFTANNNPP TPVNDPTNNK TVTNGIISSA TNRYFFDRVS ATWPEEKLLL AAKNRARTSP RVSVDMSNIQ VNTKPSASAW 801: SMVIVTGSLR GEIRIFQNFG FPVRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)