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AT1G10870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 4
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.
Computational
Description (TAIR10)
ARF-GAP domain 4 (AGD4); FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), Pleckstrin homology-type (InterPro:IPR011993), Ankyrin repeat-containing domain (InterPro:IPR020683), BAR (InterPro:IPR004148), Pleckstrin homology (InterPro:IPR001849), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 2 (TAIR:AT1G60860.1); Has 23403 Blast hits to 15248 proteins in 655 species: Archae - 77; Bacteria - 1735; Metazoa - 12296; Fungi - 2244; Plants - 1395; Viruses - 252; Other Eukaryotes - 5404 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0521EMBL:AJ130878EMBL:CP002684
EMBL:U95973EnsemblPlants:AT1G10870EnsemblPlants:AT1G10870.1entrez:837629
Gene3D:1.20.1270.60Gene3D:1.25.40.20Gene3D:2.30.29.30GeneID:837629
Genevisible:Q9SMX5GO:GO:0005096GO:GO:0005737GO:GO:0046872
Gramene:AT1G10870.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF244HOGENOM:HOG000006421
InParanoid:Q9SMX5InterPro:IPR001164InterPro:IPR001849InterPro:IPR002110
InterPro:IPR004148InterPro:IPR011993InterPro:IPR020683InterPro:IPR027267
iPTMnet:Q9SMX5KEGG:ath:AT1G10870KO:K12489ncoils:Coil
OMA:NNACAECPaxDb:Q9SMX5Pfam:PF00169Pfam:PF01412
Pfam:PF12796Pfam:PF16746Pfam:Q9SMX5Pfscan:PS50003
Pfscan:PS50088Pfscan:PS50115Pfscan:PS50297PhylomeDB:Q9SMX5
PIR:D86242PRIDE:Q9SMX5PRINTS:PR00405PRO:PR:Q9SMX5
PROSITE:PS50003PROSITE:PS50088PROSITE:PS50115PROSITE:PS50297
ProteinModelPortal:Q9SMX5Proteomes:UP000006548RefSeq:NP_172556.2SMART:SM00105
SMART:SM00233SMART:SM00248SMART:SM00721SMR:Q9SMX5
STRING:3702.AT1G10870.1SUPFAM:SSF103657SUPFAM:SSF48403SUPFAM:SSF50729
SUPFAM:SSF57863TAIR:AT1G10870tair10-symbols:AGD4UniGene:At.23871
UniProt:Q9SMX5
Coordinates (TAIR10) chr1:-:3616905..3623612
Molecular Weight (calculated) 86983.10 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.42
Length 775 amino acids
Sequence (TAIR10)
(BLAST)
001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)