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AT1G50120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YESNeggNOG:KOG4469EMBL:AY091109EMBL:AY122971
EMBL:CP002684EnsemblPlants:AT1G50120EnsemblPlants:AT1G50120.1entrez:841434
GeneID:841434Gramene:AT1G50120.1hmmpanther:PTHR12507hmmpanther:PTHR12507:SF3
HOGENOM:HOG000070840InterPro:IPR014756InterPro:IPR014848KEGG:ath:AT1G50120
OMA:WTRANDAPfam:PF08737PhylomeDB:Q8RWU2Proteomes:UP000006548
RefSeq:NP_175432.2SUPFAM:SSF81296TAIR:AT1G50120UniGene:At.27924
UniProt:Q8RWU2
Coordinates (TAIR10) chr1:+:18562302..18566015
Molecular Weight (calculated) 59108.40 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.45
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSRFSFLG IGSSSEVNDS VGVSGSKIKP SLSVQTDKDV YRPGDSIFVT IEVANSHDNA SNPSILVEKL SFEVKGLEKL DIQWFSTQKP SPGSKGRRGE
101: HIFLDSSTPS LISNQILSPG AKMTLMVRAI LPQIIPPSYK GATLRYLYYI KSTLCGRWMA LENSQFYKDS TQDFIEVETR IPLQVWVIQK NNGLLLEEDQ
201: IDGIVPTSTI QTEIYWKEMD GDSEWTRAND AYDSGEDGYD SSRDEISSVS SYPNKSNLNR TFGSSLSLNS GPRLSMKDTS YVEERVGSSP KMMLSQLSAA
301: VVSYDSGTDV SSPHKSSNSV VPSQQPKQTN GAGASMSPGA GAREPVPSEG FTRGRSYNIR MDDQVLLRFS PKNADSTYYF SDTIGGTLTF FHEEGTRRCL
401: EVSVTLETLE TINRRFVHPS RRNSPTLTKV QSDHHEVVAD LIQTSFLFSI PTDGPMSFST PRVSVQWILR FEFLTTPKSV DLSRYEHPLL VPEREKSEWV
501: LPITVHAPPP RTSGAQNRGD KLFGLEPSWI RS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)