AT1G73930.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.975 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 290 Blast hits to 263 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 30; Plants - 49; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:27795347..27797534 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70389.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||
| Length | 623 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRSPSFSVK PELSIKPDPE SLKRWIHAFC IMRFDLEQGQ LLEECYPPDC LSQEEEIEVS FNSFPDSVSQ HHNRSSIHDC IFFFRFRRPK KNTEERDGSE 101: RYLYGYVFNR QRHDERLKRG GEQKSVVILS HTPYSSVFRP LLQIIGPLYF DVGNKAIEHI AGYVSMWPAP VPGKLMELPI GNAMLKVNLP PAHSLPLENG 201: ILYEESASSM APLLPTNQSV PQGLFHDADL FGIYRGLLLQ LWTLWELLLI GEPILIIAPT PPQCSEAVAC LVSLVAPLFC SVDFRPYFTI HDPGFARLNS 301: LREGDTFPPM VLGVTNIFFL KALRNIPHVV SVGTPAPNSN RVAFTSRSAG KLSVKPEGLG VQQLSLRRFS PTNLLNAVKL RRDGPLCLMT EHKEAVWTTY 401: SAVTKPDTSI LNRLIDAGMS PRVEESMSVV NNEILRRHFL ELTTNFLAPF GPYFQVNAPS DGSSPYVTPP ALPSFGADEF LSNLSGRGVG KFLSKRMKSN 501: WPDLYRRFLR GPNFSPWFQR RRAVAEQEQR RLWRLARMKT DMRQITSQMN ELEAVDSFNA IEKHISEEVK SLESGGGADS EGTFQKLKKD LQAVFSVLPK 601: DMQQLLLLNP QRASLLQDPS ELQ |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)