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AT1G43690.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin interaction motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin interaction motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin interacting motif (InterPro:IPR003903); Has 368 Blast hits to 347 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSGVeggNOG:KOG2871EMBL:AY069902EMBL:BT002618
EMBL:CP002684EnsemblPlants:AT1G43690EnsemblPlants:AT1G43690.1entrez:840956
GeneID:840956GO:GO:0005829Gramene:AT1G43690.1hmmpanther:PTHR12473
hmmpanther:PTHR12473:SF4HOGENOM:HOG000240798InterPro:IPR003903InterPro:IPR025257
KEGG:ath:AT1G43690OMA:EEYMTCAPfam:PF13898Pfscan:PS50330
PhylomeDB:Q8VYV0PROSITE:PS50330Proteomes:UP000006548RefSeq:NP_175034.1
SMART:SM00726SMART:SM01174STRING:3702.AT1G43690.1TAIR:AT1G43690
UniGene:At.27809UniProt:Q8VYV0
Coordinates (TAIR10) chr1:+:16478519..16482589
Molecular Weight (calculated) 65467.20 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.21
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MADHQEDEDL KLALKMSMQY NPPEPKRSKP IEEEETGSGS QSGGESPEAK SRRLQRELMA AAAEKRMVLF PKSPSPVNKA RVLPISVVGG DKDEEVVGSC
101: LGKELSVEES DQLFSIVFGN EVSKSVLAQW TNQGIRFSPD PETTIGLVQH EGGPCGVLAA LQAFVLKYLL YFPGDRVASP CMGVWTLSKD RHVVSDSFSS
201: VTEEAKTKAL VRSMCEILFM CGDNNRAVIA SFTNFEDSSS NQKDEAMAGG LPIESASDLQ KILRFETFTT QASAQNKLEG TITAFQSRMG ALLFLISALL
301: SRGLDSVQAD RDDPNLPLVT APFGHASQEI VNLLLCGEAV PNVFDGRMDL GGGMFLKGIS KNVDVGFLTL LESLNFCKVG QNLKCPKWPI WVIGSESHYT
401: VLFALDPSVQ EENELELRES QIRRAFDARD QSGGGGFITV EAFHQVAQET NIRLPIKKLD DICATGFIVW SELWQVILEL DQNLGGIKDA TGLMGKKVFD
501: IYHFNGIAKS DINGGGQAMA VEGGMVPMQR PRLTKLNVSV PPKWTPEEYM TCALPPSSSE KDSEVNQPKP VQHAPLVDCI RTRWSRAACS WSGDPPSIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)